Strain | Pseudomonas aeruginosa DK2 chromosome, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
TGTTCTGGGTCAACCTGCTGGAGGTGCCGGGGCGGGAGGACGGCAGCGGCAACCTGCTGCTGGTGAGCTACCGCCTGCGGATGAAGCTCCTGTTCCGTCC GCAGGGTCTGGCCGGCGATCCGCGAGCTGCCGCGCGCCAGGTCGTCTGGCGCCTGCGTCCGGCGGTACGGCCGGGGCAGCGGGTGCTGCTGGAGGCGGAC AACCGCAGTCCCTATCACGTTTCCCTGGTGCGCCTAGAGCTGGGCGAGGGCGACCTCGCCATGTCCCTCGGCAGCGTCACCTTGCCGCCTTTCGCCGTTA CCCCGTTGAGTCTGCCGGCCGTGCCCGGCGAGGCGGCGCGGGTCCATTTCGATGCGGTGGGGGATGACGGCCAGATCGAGCGCGGCGACGCGCCGGCAGA GAGATACCCGTAGGAGTTCGGCAGGGCCCGGGGAGTTGGGCTCCTGCCGTAGCACGGCCCTGCGAATAGGTCGCGGGGTTTCACTGGAGGAAGGAAGCAC
|
|
DNA Sequence for Gene |
>PADK2_03915
ATGAACAAATGCTATGCACTGGTCTGGAACGTATCCCAGGGCTGCTGGAACGTCGTCAGCGAAGGCAGTCGCAGGCGCGGCAAGCCCGCCGGCGCCAAGG CGGCGATCGCCTCCGTCCTGGCCCTGCTGGGCGCCACGGCCCTGGCTCCGGCCTATGCGCTGCCAAGCGGGGGAACGGTGGTCGGCGGGAGCGCGAACGG GGAGATACACCTGTCGGGCGGCAACAGCCTGTCGGTCAACCAGAAGGTCGACAAGCTCATCGCCAACTGGGACTCCTTCAGCGTTGCCGCCGGCGAGCGG GTGATCTTCAACCAGCCGAGCAGTAGCTCGATTGCCCTGAATCGGGTGATCGGCACCAAGGCCAGCGATATCCAGGGCCGGATCGATGCCAACGGCCAGG TCTTCCTGGTCAACCCCAACGGCGTGCTCTTCGGTCGCGGCGCCCAGGTCAATGTCGGCGGCCTGGTGGCTTCCACGCTGGACATCACGGATGCCGAGTT CAACGGCAACTCCTCCAGATACCGTTTCACGGGTCCCTCTACCAACGGTGTCCTCAACCAGGGAGGCGCCATCACCGCGGCGGAAGGCGGCAGCATCGCC CTGCTGGGCGCGCAGGTCGACAACCGCGGGACGGTCCTGGCGCAGATGGGCGGTGTCGGGCTCGGCGCGGGCAGCGACCTGACGCTGAATTTCGACGGCA ACAAGCTGCTCGACATCCGCGTCGACGCCGGGGTCGCCAATGCGCTGGCAAGCAACGGCGGCCTGCTCAAGGCCGACGGGGGGCGAGTCCTGATGGCGGC CAGGACCGCCAATGCGCTGCTCAACACGGTGGTGAACTCCCAGGGTGCCATCGAGGCCCGTTCGCTGCGCGGCAAGAACGGGCGGATCGTGCTCGATGGC GGCTCGGACGGCAAGGTCATGGTGGGAGGCGCCTTGTCCGCCAATGCGCTGAAAGGTCCGGGACACGGCGGCACGGTCGAGGTCCGGGGGCAGGCGGTGG AAGTGGCCCTGGGCACCCAGGTGAACACGCTCGCCAGCAATGGCCTCAACGGCACCTGGAAGATTGCCGCCGACAAGATCGACGTGCGCCCGTCGGCGGT GTCGGATGGCGTCACCGTTCATGCCGACACCCTGTCGCGGAACCTGGCGAGCACCAATATCGAACTGGTTTCGACCAAGGGCGACCTGGACCTCGACGGC TCGGTGAGCTGGGCATCGGGCAACCGGCTGGGGCTGGGCTCCGCGGCCGACCTGACGCTGAATGGCAGGCTGAATGCCAGTGGCGCCAAGGCTGGGCTGG AGCTGAAGGCCGAAGGCGCTATCGATATCAATGACAAGATCGTTCTCGGCGGGGCTGGCAGCGCGCTGGCCATGGATGCCGGCGAAGGCCACCGGGTGAA CGGCACGGCGTCGGTCTCCCTGGCCGGGGCCAACGCGACCTACGTCTCCGGTGGCTATTACTACACGGTGGTGCAGAACCTGGCGCAGTTGCAGGCGATC AACAAGAACCTGGACGGCCTGTACGTGCTCGGCGGCAATATCCTGGGCGGCAGCTATTACTGCACGGCGCTGCAATCCATCGGCGGGCCCGCCGGCGTCT TCAGCGGCACCCTGGACGGTCTCGGCAACAGCATCGGCAATCTCTCGATCAGCAACACCGGGCCGAATGTCGGGCTGTTCGCCCGCTCCTCGGGCACCCT GAGCAACCTGAAACTGAACAACCTGCGGGTATCCGATAACACCTACGGCTCCGGTCCGTCTTCGCTCGGCGCCCTGGTCGGGATCAACAGCGGGCGTATC GCCAACGTCAGCGCCAGCGGGGTCTCGGTCGTCGGCAGCCGACTGCGCTCCAACGCACTGGGCGGCCTGGTCGGGCGCAATATCAACGGGCAGATCACGA ACGCATCCGTCAGCGGCGGCGTCACCGCTTATGCGGCGAGCACGGCGGTCGGCGGTCTGGTGGGGGAGAACTTCACCACCGCCTGGGGGCCGGAGGCGGT CATCGAGAACGCCCACAGCAACGTCCATGTGGCTGCACAGTCCACCGAGCGCAACAGCCTGGGCGGCGTCGGCGGCCTGGTCGGACTGAATGCGAAGGCC ACGATCAGGGCGTCCGGCAGCCAGGGGAAGGTCGAGACCTACCGGCCCGGCCTGAACGTCGGCGGCCTGGTCGGCTACAACATGTTCGGCCACGTCTCCG ATAGTAGCGCCAGCGGCCAGGTGGAGGCCGGCGGCGCGGGGTATACCGGCGGGCTGGTCGGCCTGAGTTCCGGCGGCGAGATATTCCGCTCGCAGGCGAG CGGGTCGGTGTACAGCAAGGGCGGCCTGGCGACCGGAGGGTTGATCGGCAAGGCAGAAGGCAACGGCATGCTCGGAAACCTGAAAGCCAGTGGCAGCGTC ACGGACCAGGGCGGCGCGGATCTGGGCGGGCTGGTCGGCAACAATAGCCAGAGCGCCATCGAGACCGCCGAGGCGACGGGCAAGGTCAGCGGCGGCAGCA ACAGTCGCGTCGGCGGGCTGATTGGACACAACCTCGGCGGTTCCGTCGCCCATGCGATCTCGCGCGGCGACGTGAGCGGCGGGTTCAACAGTCTGGTGGG CGGGCTCGTCGGCCACAACGGCGGCGAACTGGTCAACGTGGATGCCAGCGGCAGGATCAGCGCCGCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGC AACGCCGGTTCGATCCTGTCGGCGCGCAGCAGCAGTACCGTCAACGGCAGCGGGCGCAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGAC GCATCGTTTCGTCCATGTCGGAAGGCACCGTCAGTGGCGACTACTACGTCTCCATGGGCGGGCTGGCCGGCGTCAACCTGGGATCGATCGAGTACTCCGG CGTCAGCGGCAAGATCGACTTCAAGCCTCAGTCCCATTACGGCCAGATCTACGGTGCGCAGGTCGGCGAGAACCATGGGGTCCTGGGCGGCAACTACGTG ATCGGCGAGGCGGCGCTCCTGCCGCCTGCCGGTATCGACTACGGCAACATCTGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GGCCGGCAGGGGAGGTCCCTGGCGGACCTCCCTTCCCGGCCGGGGCCGCTCTCGCCTGGAGTGTGGCCCTCTTCCGCAGGCGCAATCTTGGAGAGTTCCA TGAGCATGAGGTTATTTCCCGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTCGTTCTCGGCCTCTGCTGCCTGACCGGCGG CCAGGCCTGGGCCCTGAACGAGGTCGCCCTGAACTGCTCGTTCGGCAATGGCAAAGGCTTGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGCG AAAGGCACGGTGCTGTTCGCCAGGCCGGTGAGCCTGTTCCTGAACTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCATCGGGGGGAACTGGT CCGGGGTGGGCTATCCGGGGCCCTACGGCACGGTGGCGTCCGACGTCAAAGGCATCGGCTATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGGT
|
|
Amino Acid Sequence |
>adhesive protein CupB5
MNKCYALVWNVSQGCWNVVSEGSRRRGKPAGAKAAIASVLALLGATALAPAYALPSGGTVVGGSANGEIHLSGGNSLSVNQKVDKLIANWDSFSVAAGER VIFNQPSSSSIALNRVIGTKASDIQGRIDANGQVFLVNPNGVLFGRGAQVNVGGLVASTLDITDAEFNGNSSRYRFTGPSTNGVLNQGGAITAAEGGSIA LLGAQVDNRGTVLAQMGGVGLGAGSDLTLNFDGNKLLDIRVDAGVANALASNGGLLKADGGRVLMAARTANALLNTVVNSQGAIEARSLRGKNGRIVLDG GSDGKVMVGGALSANALKGPGHGGTVEVRGQAVEVALGTQVNTLASNGLNGTWKIAADKIDVRPSAVSDGVTVHADTLSRNLASTNIELVSTKGDLDLDG SVSWASGNRLGLGSAADLTLNGRLNASGAKAGLELKAEGAIDINDKIVLGGAGSALAMDAGEGHRVNGTASVSLAGANATYVSGGYYYTVVQNLAQLQAI NKNLDGLYVLGGNILGGSYYCTALQSIGGPAGVFSGTLDGLGNSIGNLSISNTGPNVGLFARSSGTLSNLKLNNLRVSDNTYGSGPSSLGALVGINSGRI ANVSASGVSVVGSRLRSNALGGLVGRNINGQITNASVSGGVTAYAASTAVGGLVGENFTTAWGPEAVIENAHSNVHVAAQSTERNSLGGVGGLVGLNAKA TIRASGSQGKVETYRPGLNVGGLVGYNMFGHVSDSSASGQVEAGGAGYTGGLVGLSSGGEIFRSQASGSVYSKGGLATGGLIGKAEGNGMLGNLKASGSV TDQGGADLGGLVGNNSQSAIETAEATGKVSGGSNSRVGGLIGHNLGGSVAHAISRGDVSGGFNSLVGGLVGHNGGELVNVDASGRISAAASASVGGLVGS NAGSILSARSSSTVNGSGRSRIGGLVGENQIQGRIVSSMSEGTVSGDYYVSMGGLAGVNLGSIEYSGVSGKIDFKPQSHYGQIYGAQVGENHGVLGGNYV IGEAALLPPAGIDYGNIW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|