Pseudomonas aeruginosa AZPAE12148, NQ09_RS19685

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE12148 AZPAE12148_contig_17, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCAACCTGCTCGAGATCGATGCGCAGAACCTGGCCAAGGTCATGGCCGTGGTCCAGCGCCTGACCCGCGCCCTGGTCGAGGAGGTGCAGCCGGACGGCGT GCAGGTCGCCCAGTTCAACGGCGCCCCTGCCGGGCAGACGGTCTTCCACATCCATTTCCACGTCATCCCGCGCTTCAGCGGCGAGAATCTCGGCATCCAT GCGGCGAAGCAGGGCGACCCGGAAGTGCTCGCACAACTTCAGGAGCGTTTGGCGCAGCGTCTGCAAGGCTGATTGCGCATGGGCCGGCCCGGTTCGGGGG CGGTCCTTCGCTCGTCGGATTTTTCTGAAATATTTTGTTACATACTGTCGAGGGTCAGGCGCGCCGCGGTTTTCCGGCGATGTGCGCAACAATTTGCACA GTTTTTTTGACGTAGCATCCGCGCGATCACGCACTTCGGATCGAGCACGGCGAACAGGGACGCCAGCCGTGCAGGTTTTTCGAGAAACAGGGGACAGCGG
DNA Sequence for Gene
>NQ09_RS19685
ATGTTCAACCCGGCCAACCAGACCCACTTCAGCCTCAGCCTCGACGGCCTCCGTCACGACCTGCAGGTCCTCGCCTTCAACGGCCACGAAGGCATCAGCC GGCCCTACCGCTTCGAACTCGAACTGGTCAGCGAGCGCGCCGGCCTCGACCTCGAAGCGCTCATGCACCGGCCCGCCTTCCTCGCCTTCACCCCGCAGGG CCAGGGTGTCCACGGCCTGGTCTACGGCGCTGCCCAAGGCGATGCCGGCAAGCGCCTGACCCGCTATCGCCTCACCCTCGTGCCGCAACTGGCCTACCTC GCGCAGCGCAGCAACCAGCGGATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGCCCTGATCCTCGAGGAGCACGGCATCCTCGCCGACGCCTACCGCT TCCAGCTCGGCACCCGGTATCCCGAACGCGAATACTGCGTGCAGTACGACGAAAGCGACCTGCATTTCGTCCAGCGCCTCTGTGCCGAAGAGGGCATCCA TTTCCATTTCCGGCACAGCGCCGAGGCGCACCTGCTGGTGTTCGGCGACGACCAGACGGTGTTCCCCCGCCTGGGCCGTCCCACCGCCTACGTGCACGAC AGCGGGCTGGTCGCCGACGAACCGGTGATCAAGCGCTTCAGCCTGCGCCTGGCCAGCCGCACCACGCGCACCACTCGCCGCGACTACGACTTCGAGAAGC CGCGGCTGCTGCTGGAGGCCGGCAATCGCCCCGCTGCCGACGCCCCGGCCGAGCCGGACCTGGAGGACTACGACTACCCCGGTCGCTTCGTCGATCGCCA GCGCGGCAAGCTGCTCAGCCAGCGCGCCCTGGAGCGGCACCGCGCCGACCGGCGCCTGGGCGAAGGGGTCAGCGACCAGCCGCTGCTGGTCAGCGGGCAC TTCCTGGAGATCGCCGAGCACCCGCGCGCGGAGTGGAACGACCTGTGGCTGCTCAGCGAAGTCTTCCACGAAGGCAAGCAGCCGCAGGTGCTGGAAGAGA ACGTTACCTCCGACACGTCGGCCAGCACGGACGACTTCCAGCAGGGCTACCGCAACCGCTTCCTCGCGACGCCCTGGGAGGTGTTCTTCCGCCCGCCGCT GGAACACCCGAAGCCGCGCGTGCTGGGCAGCCAGACCGCGGTGGTGACCGGCCCGCCAGGCGAGGAAATCCACTGCGACCGCTACGGCCGGGTCAGGGTA CAGTTCCACTGGGACCGCGAGGGCCAGGGCGACGACAAGAGCAGTTGCTGGCTGCGCGTAGCCAGCGGTTGGGCCGGCAACGGCTATGGCGGCATCGTCA TTCCGCGGGTCGGCATGGAAGTGCTGGTGGACTTCCTCGAAGGCGATCCCGACCAGCCGCTGGTCAGCGGCTGCGTCTACCACGCCGCCCACCCGGTGCC CTACGAGTTGCCGGCGAACCAGACCCGCAGCGTCTTCAAGAGTCTCAGCAGCCCTGGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGATCGCAAGGGC CAGGAACAGATCTTCGTCCATGCCCAGCGCGACTGGGACGAGAACATCGAGCATGACCAGAAGATCCGCGTCGGCCACGAACGCCACGACACCGTGGAGG CGAACAGCTACAGCGAGTTCAAGGCCGAGGAGCATCACACCGTGCACGGAGAGCGCAAGGTCGAGCTGAAGGCCGATGACCACCTGACGGTCGGCGACAG CCAGCACGTGAAGCTCGGTCGTGCCTACCTGGCCAGGGCCGGGCGCGAGATCCACCTGAAGGCCGGGCAGAAGATGGTGATCGAGGCTGACAGCGAACTG ACGGTGAAGGCCGGCGGCAGCTTCATCCGGCTCGACGCAAGTGGCATCGCCATCAGCGGCCCGCTGGCACGGATCAATGCAGGCGGCGCGCCGGGAAGCG GCTCGGGGATCGCGATCAAGATGCCGCGGGTGCCGGGCATGGCCGACCAGGACAGCTCCGGCGCGCCACCCGAGGCGGTCGCGGCCAACCTGCCGCCGCG GCAACCGGTCTGCGAAGAGTGCCTGCTACAGGCGAAGAAAAGAGGCCAGGCGCTCGCCGAGCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGAACCGCGATGACGCCGAACCCCCGCCATTGGGCCCGCGAGCTGTGGCAGCGCTCCCGCGATCGCGGCTTGCAGACCCACATCGATGTATTGGTCGATG CCACCGGGCTGGACGACTATCCCTTGCTCGCCGAGCATGCGCGGCAAAGCGATCCTCCGGCGCTGTTCAAATTGCTGGAGCAAACCCCGGAGGCCGCCCT GGCCGACGAGGGCCCGCTGCTGCTGCGCCTGGAAGACGGCCACGCGGCCTGGCTGGACGAACTGCTCGAACGCATCGACTGCCGCCGCCATCTGATGCTC CTGTTCAGCCCCTGGCCGTTGCCGCGCCTGGGCGAGCACCTGCGCAGCTGCACCCAGGCCGAGTGGAACCAGGGTCGTTCCAGCGGCGTACTGCGTTTCT ACGAGCCGGGCCTGTTCATGGCCGTCAGCGACATGCTCGATCCCCGGCAGAGCCGTTACCTGCATGCCCCGGTTTCCAGCTGGCACTGGCTGGACCGCGA
Amino Acid Sequence
>type IV secretion protein Rhs
MFNPANQTHFSLSLDGLRHDLQVLAFNGHEGISRPYRFELELVSERAGLDLEALMHRPAFLAFTPQGQGVHGLVYGAAQGDAGKRLTRYRLTLVPQLAYL AQRSNQRIFQHLTVPQIVALILEEHGILADAYRFQLGTRYPEREYCVQYDESDLHFVQRLCAEEGIHFHFRHSAEAHLLVFGDDQTVFPRLGRPTAYVHD SGLVADEPVIKRFSLRLASRTTRTTRRDYDFEKPRLLLEAGNRPAADAPAEPDLEDYDYPGRFVDRQRGKLLSQRALERHRADRRLGEGVSDQPLLVSGH FLEIAEHPRAEWNDLWLLSEVFHEGKQPQVLEENVTSDTSASTDDFQQGYRNRFLATPWEVFFRPPLEHPKPRVLGSQTAVVTGPPGEEIHCDRYGRVRV QFHWDREGQGDDKSSCWLRVASGWAGNGYGGIVIPRVGMEVLVDFLEGDPDQPLVSGCVYHAAHPVPYELPANQTRSVFKSLSSPGGGGYNELRIEDRKG QEQIFVHAQRDWDENIEHDQKIRVGHERHDTVEANSYSEFKAEEHHTVHGERKVELKADDHLTVGDSQHVKLGRAYLARAGREIHLKAGQKMVIEADSEL TVKAGGSFIRLDASGIAISGPLARINAGGAPGSGSGIAIKMPRVPGMADQDSSGAPPEAVAANLPPRQPVCEECLLQAKKRGQALAER
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site