Pseudomonas aeruginosa AZPAE12411, NQ20_RS18790

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa strain AZPAE12411 AZPAE12411_contig_25, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCTGCTCACCACCAACGCCGGCACCGAGATGATCGCCAGCCTCTGCGCCGATCCGGAACTGATGCCCGAGCCGGAAGCCATCGCCAAGTCGCTGCGCGAA CCGCTGCTGAAGATCTTCCCGCCGGCGCTGCTCGGCCGCCTGGTGACCATCCCCTACTACCCGCTCAGCGACGACATGCTCAAGGCCATTTCGCGCCTGC AACTGGGGCGGATCAAGAAGCGCGTGGAGGCGACCCACAAGGTGCCGTTCGAGTTCGACGAGGGCGTCGTCGAGCTGATCGTCTCGCGCTGCACCGAGAC CGAGAGCGGCGGCCGGATGATCGACGCGATCCTCACCAACACGCTGTTGCCGGACATGAGCCGCGAGTTCCTCACCCGCATGCTCGAAGGCAAGCCGTTG GCCGGGGTACGTATCAGTAGCCGCGACAACCAGTTCCACTACGACTTCGCCGAGGCCGAGTGACAACCGGCGACACGCAGAGCAGTAGAAGGAACCGTCG
DNA Sequence for Gene
>NQ20_RS18790
ATGGGATTGATGCAACTGACCCGCCTGGTCCAGGTGGATTGCCCGCTGGGGCCGGACGTGCTGCTGTTGCAGCGCATGGAGGGACGCGAGGAACTGGGAC GGCTGTTCGCCTACGAGCTGCACCTGGTATCGGAAAATCCCAACCTGCCGCTGGAGCAGTTGCTCGGCAAGCCGATGAGCCTGTCGCTGGAGCTGCCCGG CGGCAGCCGGCGCTTCTTTCACGGCATCGTCGCGCGCTGTAGCCAGGTGGCCGGGCACGGCCAGTTCGCCGGCTACCAGGCCACCCTGCGGCCCTGGCCG TGGCTGCTGACGCGCACCTCGGACTGCCGCATCTTCCAGAACCAGAGCGTGCCGGAGATCATCAAGCAGGTGTTCCGCGACCTCGGCTTTTCCGATTTCG AGGATGCCCTCACGCGCCCCTACCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGCTTCGACTTCATCAGCCGGCTGATGGAACAGGAAGGCAT CTACTACTGGTTCCGCCATGAGCAGAAGCGCCACATCCTGGTGCTCTCCGACGCCTACGGCGCGCATCGCAGCCCGGGTGGCTACGCCAGCGTGCCGTAC TACCCGCCGACCCTCGGCCATCGCGAGCGCGACCACTTCTTCGACTGGCAGATGGCACGCGAGGTCCAGCCCGGTTCGCTGACCCTCAACGACTACGACT TCCAGCGCCCCGGCGCGCGCCTGGAGGTGCGTTCGAACATCGCCCGGCCGCACGCGGCGGCCGACTACCCGCTGTACGACTATCCCGGCGAATACGTGCA GAGCCAGGACGGCGAGCAGTACGCGCGCAACCGCATCGAGGCGATCCAGGCGCAGCACGAGCGCGTGCGCCTGCGCGGCGTGGTGCGCGGGATCGGCGCC GGGCACCTGTTCCGCCTGAGCGGCTATCCGCGCGATGACCAGAACCGCGAGTACCTGGTGGTCGGCGCCGAATACCGGGTGGTCCAGGAACTCTACGAAA CCGGCAGCGGCGGCGCCGGCTCGCAGTTCGAGAGCGAGCTGGACTGCATCGACGCCAGCCAGTCGTTCCGTCTCCTGCCGCAGACTCCGGTACCGGTGGT GCGAGGTCCGCAGACCGCGGTGGTGGTCGGACCCAAGGGCGAGGAGATCTGGACCGACCAGTACGGCCGGGTCAAGGTGCACTTCCACTGGGATCGCCAC GACCAGTCGAACGAGAACAGCTCCTGCTGGATTCGCGTGTCCCAGGCCTGGGCCGGGAAGAACTGGGGTTCGATGCAGATCCCGCGGATCGGCCAGGAAG TGATCGTCAGCTTCCTCGAAGGCGACCCGGACCGGCCGATCATCACCGGGCGGGTCTACAACGCCGAGCAGACGGTGCCCTACGAGCTGCCGGCGAACGC CACCCAGAGCGGGATGAAGAGCCGTTCGAGCAAGGGCGGCACGCCGGCCAACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTATAC ATCCACGCCGAGCGCAACCAGGACAACCTGGTCGAGAACGATGCCTCGCTGTCGGTCGGCCACGACCGCAACAAGAGCATCGGCCACGACGAGCTGGCGC GCATCGGCAACAACCGCACCCGCGCGGTGAAGCTCAACGACACCCTGCTGGTGGGCGGGGCGAAGAGCGACAGCGTCACCGGCACCTACCTGATCGAGGC CGGCGCGCAGATCCGCCTGGTCTGCGGCAAGAGCGTGGTGGAGTTCAACGCCGACGGCACCATCAATATCTCCGGCAGCGCCTTCAACCTCTACGCCAGC GGCAACGGCAACATCGACACCGGCGGCCGCCTCGATCTCAATTCCGGCGGCGCCAGCGAGGTCGACGCCAAGGGCAAGGGCGTGCAGGGCACCATCGACG GCCAGGTACAGGCGATGTTTCCGCCGCCGGCGAAGGGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGCGGCGGCATCCTGGCTGCCCGCCCTTGGGCAGGACGCCGCGGGAGCCTTGACGATTCGCGCATGTCCTCGCCAGGCAGAAGCGGCGGTCGCTCAAGAC CGATGGTGTTGTGCTCAGGGCAGATCGACCTTCAGGCCGCGGCCAGTGCGTATACCGACGTAGTAGGCGTCCTTGAGGGCCCTGGAGAGTTCCGGGTCGG TTTCGTCGAATTCCTTCACGGCGATGCTGCCGAGGGTCAACCGGTGCAGTGCGGAACGATCCAGGCTGCGGTCGAGCAGGACGGACCTGATGTACTGCAA TTGCTTTTCCGCGGACAGCAGGACCTCGTATCCCGGATAGCGGGCCAGCCGGTCGACGACCAGCGCCAGAGCGCGGTCGATGTATTCGATGGGTGTCATG ATCCCTCCCGGGGAAGCAGACCGAAGGAGCCTTTCTCGTTGGAGAACAGTTGTTGCGCGCCGCCTTTGGCGGGATATGACTGTCCCTTTACCGACCAGAA
Amino Acid Sequence
>type VI secretion protein ImpA
MGLMQLTRLVQVDCPLGPDVLLLQRMEGREELGRLFAYELHLVSENPNLPLEQLLGKPMSLSLELPGGSRRFFHGIVARCSQVAGHGQFAGYQATLRPWP WLLTRTSDCRIFQNQSVPEIIKQVFRDLGFSDFEDALTRPYREWEYCVQYRETSFDFISRLMEQEGIYYWFRHEQKRHILVLSDAYGAHRSPGGYASVPY YPPTLGHRERDHFFDWQMAREVQPGSLTLNDYDFQRPGARLEVRSNIARPHAAADYPLYDYPGEYVQSQDGEQYARNRIEAIQAQHERVRLRGVVRGIGA GHLFRLSGYPRDDQNREYLVVGAEYRVVQELYETGSGGAGSQFESELDCIDASQSFRLLPQTPVPVVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRH DQSNENSSCWIRVSQAWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGMKSRSSKGGTPANFNEIRMEDKKGAEQLY IHAERNQDNLVENDASLSVGHDRNKSIGHDELARIGNNRTRAVKLNDTLLVGGAKSDSVTGTYLIEAGAQIRLVCGKSVVEFNADGTINISGSAFNLYAS GNGNIDTGGRLDLNSGGASEVDAKGKGVQGTIDGQVQAMFPPPAKG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site