Pseudomonas aeruginosa AZPAE12411, NQ20_RS11460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE12411 AZPAE12411_contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAACCTGCTCGAGATCGATGCGCAGAACCTGGCCAAGGTCATGGCCGTGGTCCAGCGCCTGACCCGCGCCCTGGTCGAGGAGGTGCAGCCGGACGGCGT GCAGGTCGCCCAGTTCAACGGCGCCCCCGCCGGGCAGACGGTCTTCCACATCCATTTCCACGTCATCCCGCGCTTCAGCGGCGAGAATCTCGGCATCCAT GCGGCGAAGCAGGGCGACCCGGAAGTGCTCGCACAACTTCAGGAGCGTTTGGCGCAGCGTCTGCAAGGCTGATTGCGCATGGGCCGGCCCGGTTCGGGGG CGGTCCTTCGCTCGTCGGATTTTTCTGAAATATTTTGTTACATACTGTCGAGGGTCAGGCGCGCCGCGGTTTTCCGGCGATGTGCGCAACAATTTGCACA GTTTTTTTGACGTAGCATCCGCGACATCCCGCTCTTCGGAGCGACCACGGCGAACAGGGACGCCAGCCGTGCAGGTTTTTCGAGCAACAGGGGACAGCGG
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| DNA Sequence for Gene |
>NQ20_RS11460
ATGTTCAACCCGGCCAACCAGACCCACTTCAGCCTCAGCCTCGACGGCCTCCGTCACGACCTGCAGGTTCTCGAATTCAGCGGCCACGAAGGCATCAGCC GGCCCTACCGCTTCGAACTCGAACTGGTCAGCGAGCGCGCCGGCCTCGACCTCGAAGCGCTCATGCACCGGCCCGCCTTCCTCGCCTTCACCCCGCAGGG CCAGGGTGTCCACGGCCTGGTCTACGGCGCTGCCCAAGGCGATGCCGGCAAGCGCCTGACCCGCTATCGCCTCACCCTCGTCCCACACCTGGCCTACCTC GCCCAGCGCAACAACCAGCGGATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGCCCTGGTCCTCGAGGAGCACGGCATCCTCGCCGACGCCTACCGCT TCCAGCTCGGCACCCGGTATCCCGAGCGCGAATACTGCGTGCAGTACGACGAAAGCGACCTGCATTTCGTCCAGCGCCTCTGTGCCGAAGAGGGCATCCA TTTCCATTTCCGGCACAGCGCCGAGGCGCACCTGCTGGTGTTCGGCGACGACCAGACGGTGTTCCCCCGCCTGGGCCGTCCCACCGCCTACGTGCACGAC AGCGGGCTGGTCGCCGACGAACCGGTGATCAAGCGCTTCAGCCTGCGCCTGGCCAGCCGCACCACGCGCACCACCCGCCGCGACTACGACTTCGAGAAGC CGCGGCTGCTGCTGGAGGCCGGCAACCGCCCCGCTGCCGACGCCCCGGCCGAGCCGGACCTGGAGGACTACGACTACCCCGGTCGCTTCGTCGATCGCCA GCGCGGCAAGCTGCTCAACCAGCGCGCCCTGGAGCGGCACCGCGCCGACCGGCGCCTGGGCGAAGGGGTCAGCGACCAGCCGCTGCTGGTCAGCGGGCAC TTCCTGGAGATCGCCGAGCACCCGCGCGCGGAGTGGAACGACCTGTGGCTGCTCAGCGAAATCTTCCACGAAGGCAAGCAGCCGCAGGTGCTGGAAGAGA ACGTTACCTCCGACACGTCGGCCAGCACGGACGACTTCCAGCAGGGCTACCGCAACCGCTTCCTCGCCACGCCCTGGGAGGTGTTCTTCCGCCCGCCGCT GGAGCACCCGAAGCCGCGCGTGCTGGGCAGCCAGACCGCGGTGGTGACCGGCCCGCCGGGCGAGGAAATCCACTGCGACCGCTACGGCCGGGTCAGGGTG CAGTTCCACTGGGACCGCGAGGGCCAGGGCGACGACAAGAGCAGTTGCTGGCTGCGCGTAGCCAGCGGTTGGGCCGGCAACGGCTATGGCGGCATCGTCA TTCCGCGGGTCGGCATGGAAGTGCTGGTGGACTTCCTCGAAGGCGATCCCGACCAGCCGCTGGTCAGCGGCTGCGTCTACCACGCCGCCCACCCGGTGCC CTACGAGTTGCCGGCGAACCAGACCCGCAGCGTCTTCAAGAGCCTCAGCAGCCCTGGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGATCGCAAGGGC CAGGAACAGATCTTCGTCCATGCCCAGCGCGACTGGGACGAGAACATCGAGCATGACCAGAAGATCCGCGTCGGCCACGAACGCCACGACACCGTGGAGG CGAACAGCTACAGCGAGTTCAAGGCCGAGGAGCATCACACCGTGCACGGAGAGCGCAAGGTCGAGCTGAAGGCCGATGACCACCTGACGGTCGGCGACAG CCAGCACGTGAAGCTCGGTCGTGCCTACCTGGCCAGGGCCGGGCGCGAGATCCACCTGAAGGCCGGGCAGAAGATGGTGATCGAGGCTGACAGCGAACTG ACGGTGAAGGCCGGCGGCAGCTTCATCCGGCTCGACGCAAGCGGCATCGCCATCAGCGGCCCGCTGGCACGGATCAATGCAGGCGGCGCGCCGGGAAGCG GCTCGGGGATCGCGATCAAGATGCCGCGGGTGCCGGGCATGGCCGACCAGGACAGCTCCGGCGCGCCACCCGAGGCGGTCGCGGCCAACCTGCCGCCGCG GCAACCGGTCTGCGAAGAGTGCCTGCTACAGGCGAAGAAAAGAGGCCAGGCGCTCGCCGAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACCGCGATGACGCCGAACCCCCGCCATTGGGCCCGCGAGCTGTGGCAGCGCTCCCGCGATCGCGGCTTGCAGACCCACATCGATGTATTGGTCGATG CCACCGGGCTGGACGACTATCCCTTGCTCGCCGAGCATGCGCGGCAAAGCGATCCTCCGGCGCTGTTCAAATTGCTGGAGCAAACCCCGGAGGCCGCCCT GGCCGACGAGGGCCCGCTGCTGCTGCGCCTGGAAGACGGCCACGCGGCCTGGCTGGGCGAACTGCTCGAACGCATCGACTGCCGCCGCCACCTGATGCTC CTGTTCAGCCCCTGGCCGTTGCCGCGCCTGGGCGAGCACCTGCGCAGCTGCACCCAGGCCGAGTGGAACCAGGGTCGTTCCAGCGGCGTACTGCGTTTCT ACGAGCCGGGCCTGTTCATGGCGGTCAGCGACATGCTCGATCCCCGGCAGAGCCGTTACCTGCATGCCCCGGTTTCCAGCTGGCACTGGCTGGACCGCGA
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MFNPANQTHFSLSLDGLRHDLQVLEFSGHEGISRPYRFELELVSERAGLDLEALMHRPAFLAFTPQGQGVHGLVYGAAQGDAGKRLTRYRLTLVPHLAYL AQRNNQRIFQHLTVPQIVALVLEEHGILADAYRFQLGTRYPEREYCVQYDESDLHFVQRLCAEEGIHFHFRHSAEAHLLVFGDDQTVFPRLGRPTAYVHD SGLVADEPVIKRFSLRLASRTTRTTRRDYDFEKPRLLLEAGNRPAADAPAEPDLEDYDYPGRFVDRQRGKLLNQRALERHRADRRLGEGVSDQPLLVSGH FLEIAEHPRAEWNDLWLLSEIFHEGKQPQVLEENVTSDTSASTDDFQQGYRNRFLATPWEVFFRPPLEHPKPRVLGSQTAVVTGPPGEEIHCDRYGRVRV QFHWDREGQGDDKSSCWLRVASGWAGNGYGGIVIPRVGMEVLVDFLEGDPDQPLVSGCVYHAAHPVPYELPANQTRSVFKSLSSPGGGGYNELRIEDRKG QEQIFVHAQRDWDENIEHDQKIRVGHERHDTVEANSYSEFKAEEHHTVHGERKVELKADDHLTVGDSQHVKLGRAYLARAGREIHLKAGQKMVIEADSEL TVKAGGSFIRLDASGIAISGPLARINAGGAPGSGSGIAIKMPRVPGMADQDSSGAPPEAVAANLPPRQPVCEECLLQAKKRGQALAER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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