Strain | Pseudomonas aeruginosa strain AZPAE12411 AZPAE12411_contig_1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCGCTCGCGCCCCCGAGGATTTCTCCAAGAAGTTCCGCTACAACCAGCGGCGCGAAGTGCGCCTGGTGGAGGAGGCTGGTGGCCAGGTGCGCCAGGCAGA CAGCTTCGCCCCGGCCGAGTTCGCCGCCATCTATCTTGAACTGTTCCAGCGTCGCTGGGGTTTCCCGGCCACCGGCGCGGAGCGCATGGCCGAGGTCTTC GAGCGGCTGCGCGAATTGCTGCGCGGCTCGGTCCTGCTGCTCAACGACCAGCCCATCGCGGTCCAGGTACTGTATCGCGCCGAAGCGCCGGGCTGGCTCA GCGTCGAGTACATCAACGGCGGCGTCGATCCGCAGACCCGCGAGTTCAGCCCTGGCAGCGTGCTCAGTTACCTGAACACCCAGGCCGCCTGGGAGGATGC GCGGGCGCTGGGCAAACCCCTGCGCTATTCGTTCGGTCGCGCCGACCGCGAATACAAGGATCGCTGGTGCCATCCTTCTTCGGTCTTCCAGGTCTGAAGC
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DNA Sequence for Gene |
>NQ20_RS01355
ATGAGTGCACGCAAGCAGCAGTTGCTCAAGCGTCATCGACGCAACAAGCGGATCGGCCTACTGGTTGCGCTGCTGGCATTGCTGGCCGTCGGTCTGCTGG TCAGCCCCTGGTTGTTGCCGATCCTCCTCGTGGCCCTGTGGGTCGCCCACGAAGCCTGGTTCGCCGATCACCTGTTCTATTCGCCGGGCGAGGACTACCG CTACCGTTTCGCGGAAGGGGTCGAGTCGCTGCCGGTACGCCTGGCGGATGGCCGTCTGCGAGTCGACGGCGAGCTGCGCGAAGGCGATACGCTGGTGCTT GGCATCGGCGTGCGCGCTGGCTGGCTGGGGCGTTTCCTCGAACCCTCGGTGCTGCTGGAAGGTGGCGCGGAGGCCGATGCCCAGGCTTTCGAACGTGGGG TGAACGGCTTGCGCTACCTGAACCTGACGGGACTGGCCGGGCCGCTGGGCGAGGGCCGGATTCGCCTGAGCGGCCGGCATTGTCGGCTGGTCGGCGAACC GACCCTGTGGCGTGCGCGCCATCCCGACTACCGTGAGCGGCGGGTGATGGTCATCGCTCCGCATGCCGACGACGCCGAGCTGGCCGCCTTCGGCCTCTAC AGCCAGGCTCGCGAGGCCTGGATCGTGACCCTGACCGCCGGCGAGATCGAAACCGAGCATTACCGCCGCATGGGCCTCGACGGAATAGCTGCGGCGCGCC TGAAGGGTCGCCTGCGCGCCTGGGATAGCCAGGCCGTGCCGACGTGGGGTGGGGTGCCGGCCGAGCGCTGCGTGCAACTGGGTTATTTCTGCCTGCAATT GCCTGCCATGCAGGCGAACCCGGGCGAGGTGGTGCCGTCCCGTGAGGCCGATCTCGCCGATATCCGTCCGTTCCGCCAGTTCAACCGCCTGCGCCTGGCC AGCGATGCCGACGGCCTGTCGACCTGGAACAATCTGCTGTCCGATCTCCGCGAGCTGATCCTGCTGGCACGTCCCGAGGTCATCGTCCTGCCTCATCCGC ATTTCGATCCGCACCCGGACCATGTCCGCGCCCAGGAGGCTGTGCGCGAGGCGCTCCAGGGCCTGGACTGGCAGCCGCAGGCATTGTTGCACTATGCCAA TCACCTGCACGACAACGATCGCTGGCCGATGGGCGATGCGCACATGGGGGTCAGCCTGCCACCGCTGACCGAAGAATGCTCGCCGTTGCTGCCATGGACG CTGGCGCTGGAGCGCACGCGCCAGGTGGACAAGGCCATGGCCTTGGGCATGATGCACGACCTGCAACCCAGGCCGCCGTTCAAGCGCCGTCTGCGCCGCC GTCTGCAGGGCTGGCTCGCCGGGCGTCGCTGGCCGGCTTACGGCGAGGACGAGTTCATGCGCAAGGCGGTGCGTCGGCACGAGTTGTTCTGGGTGGAGTC GCTGGATGGGGAGGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGCTTGGGTCGAGCGTTCGGCAAGGTTCGAGCCGCCATGCTGCTTCGGAGCAGCCGCGAGGATGAAGGTCTGATGAAAGTTCTGTTTCTGGTCCAGAAAG AGCAGCGCGCGATCCTGGATCGCCTGTACGACGGCATCGCCGCCCATTGCGAGTGCGATACCCGCTGGCTGAGCAGCGAGGAGCAGGCCGACCTGCGCGG CTACTTCCGCAAGCACGTGGATGTCTCGCGCTACGACCGCATCCTGTTCTTCCTCCGTTTCAAGAAGGAAATGCGCCAGGTCCGCTTCATCCGCAGCGTG CCCAACCTGGTGATCCTCGAGCACGATGCCTACCAGAACTACATTCCCTGCAAGTACACCGGCAAGTTCAGCGCCCATTACCGGCGCCTGCCCTGGGCAC GGGTGATCAGTTCGGGCCATACGGTCAGCGAACGCCTGCGCCAGGAGGGATTCGACGCGGTATTCGTGCCCAAGGGCTACGACCAGACCCTGTTGCATGA
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Amino Acid Sequence |
>GlcNAc-PI de-N-acetylase
MSARKQQLLKRHRRNKRIGLLVALLALLAVGLLVSPWLLPILLVALWVAHEAWFADHLFYSPGEDYRYRFAEGVESLPVRLADGRLRVDGELREGDTLVL GIGVRAGWLGRFLEPSVLLEGGAEADAQAFERGVNGLRYLNLTGLAGPLGEGRIRLSGRHCRLVGEPTLWRARHPDYRERRVMVIAPHADDAELAAFGLY SQAREAWIVTLTAGEIETEHYRRMGLDGIAAARLKGRLRAWDSQAVPTWGGVPAERCVQLGYFCLQLPAMQANPGEVVPSREADLADIRPFRQFNRLRLA SDADGLSTWNNLLSDLRELILLARPEVIVLPHPHFDPHPDHVRAQEAVREALQGLDWQPQALLHYANHLHDNDRWPMGDAHMGVSLPPLTEECSPLLPWT LALERTRQVDKAMALGMMHDLQPRPPFKRRLRRRLQGWLAGRRWPAYGEDEFMRKAVRRHELFWVESLDGEA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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