Pseudomonas aeruginosa AZPAE12411, NQ20_RS00395
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE12411 AZPAE12411_contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCCAGCACCGCGGAGGGCTTCAGCGCCGCGTCCAGCTCGCGGAAGATCGATTGCTTGAGTTCCAGGTTCTCGTAGACCGCCTCGATCACCAGGTCCGC CTCGCGCATCGCGGCGAGGTGCTGGACCGGCGTGATGCGGGCGCGGCGCGCGGCCGCTTCCTCTTCGCCGATGCGCCCCTGGCGCACGTGGTGCGCGTAG GTGTCGGCCACGGCGCCGAGCGCCTGGTTGAGCATCTGCGGGTTGCTGTCCAGCCACTGCACGTCGAGACCGGCGTTGGCCAGGCACATGACGATACCGC GACCCATGGTGCCGGCGCCGATCACCGCGGCCTGGCGGAAGGAAAAGTTCTGGCTCATGGTCTTGTCCTCGTTGTAGCGAGCGCAGGAGGAACGGTGGAC GAAACCTGGGGCAGTCCGACCGCACAAAAAGCGACCACTACCTTAGGGGAAGGTCGTACTATTTTTGAAATTTAGTCTTGTGATAGCTGGAATTCAGGCA
|
|
| DNA Sequence for Gene |
>NQ20_RS00395
GTGAATATCCAAACCTTCGACCTCAACCTGCTACGCGTCCTTGACGCGCTGCTGCGCGAACGCAACGTCTCGCGCGCGGCGGAGCGCCTGGCGCTGAGCC AGCCGGCAGTAAGCAATGCGCTGAACCGCCTGCGCGAGCTGCTCGACGACCCGCTGCTGGTCCGCGCCGGTCGTGCGATGCAGCCGACGCCCCGGGCGCT GGCGCTGGAAGCGCCGATCCGCGCGGCGCTGCGGCAGATCGAACAGAGCCTGGGCGACGGCGAGGGCTTCGATCCGGGGCGCAGCCGGCAGCGCTTCACC GTAGCGGTGACCGACTACGTCGAACTGATCTGCATGCCCGCCCTGATGCGCCGCCTGAGTGAGCGGGCGCCGGGAATCTCCATCGCCATCCAGCACCTGA CCCCGACCTTGCCGGCCGAGGCGCTGGACAAAGGCGAACTGGACCTGGTGCTAGGCCGCTTCGAAAACGTCCCGGCGCGCTTCCAGCGCCGCCATTGGGC CAGCGAGACCCTGCAACTGGTCGCCCGGCGTCAGCACCCGCTGCTGGCGCAGGCTCCCGACCTGGCCACCTTCCTGGAGCTGCAGCACCTGTGGGTGCAC GGCGGGCAGACCAAGGGGATGGTCGACCAGTGGCTGGGCAGCCAGGGGCTCAAGCGGCAAGTGGCCTACACCACGCCGAACTACCTGCAGGCAGCGCACA TCGCCGCGTACAGCGACCTGGTCGGCGTCCTGCCGCGACAACTGGCGCACTACTTCGAACGATTGCTGCCCCTGCAATCGTTCGACCTGCCGTTCGACCT CGGCCCGTTCCACCTGGAACTGGTGTTTCTGGCCCAGCGCGAACGCGACATCGCCCTGCAATGGCTGGTCGAACAGATCCGCCAGGTCGGGGCCGCCGGA CCGGACTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGGAATCCGGGCAGTCAGAAGCGGTCGCGAATGACCAGTTCTTCCCGCGGCAGCTTGCCGCTGCGCGGCCAGGGTTCAACGGCCTTTTTCCCGACCGCGA CCATCAGGCCGATCACATGGTTGTCCGGCAGGTTGATCAGCCGGGCCACGGCATCGAAGTCGAAACCATCCATCGGACACGAATCCAGGCCCTGGCCGCG GGCGACCAGCATCAGGGTCTGCGCCAGCAGGCCGCAGCTGCGCATGGCTTCGTCGCGCTGTACCTGGGGCTTGCCGCGGTAGTAGGTGTCGATGGCGCCT GCCATGAACGCCTGTACCGCCTCGGGAGCACCGTCCCAGACTCGCTGCGCGTTGCGCTCCCAACTGTCGAGCTGGGCGCACACCACCACCAGCATCGCCG CGTCGGTGACCTGCGCCTGGTCCCAGGCCACTTCACGCAACTGCACGCGCAATTGCGGATCGCTGACCTCGACCAGCCGCACGTGTTGCAGGTTGAAGGC
|
|
| Amino Acid Sequence |
>LysR family transcriptional regulator
MNIQTFDLNLLRVLDALLRERNVSRAAERLALSQPAVSNALNRLRELLDDPLLVRAGRAMQPTPRALALEAPIRAALRQIEQSLGDGEGFDPGRSRQRFT VAVTDYVELICMPALMRRLSERAPGISIAIQHLTPTLPAEALDKGELDLVLGRFENVPARFQRRHWASETLQLVARRQHPLLAQAPDLATFLELQHLWVH GGQTKGMVDQWLGSQGLKRQVAYTTPNYLQAAHIAAYSDLVGVLPRQLAHYFERLLPLQSFDLPFDLGPFHLELVFLAQRERDIALQWLVEQIRQVGAAG PD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|