Pseudomonas aeruginosa M18, PAM18_5608
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa M18 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCCCAGCACAGCAACGGCCTGCTCAGCCGCTGGCGGCCGACCCTGCTGGAAGATCATCCGTTGCCCGGTCCGCCGGGGCGCGGCGCGATCTTCGTGC GCTTTGGCGAAGGCGCCGACGCGCTGGTGGTAGTGATGATGCATCTCGCTCTCGGCGCTCGCACCCGCACTCGCCAGCTCGCCTATATCCGCGAGCTGAT TGGCGACTACCGCCACCAGGTGCTGATGGGCGACATGAACACCCACGCCGTCGATCTTCTGGAAAACTCGCCCCTGCGCGACCTCGGCCTGATGGCGCCG CAGGTCGAGGCGACGTTTCCCAGCTGGCGGCCGCAGCGCAATCTCGACCATATCCTGCTCAGTTCCGATCTCGCTCTCGAGCGGGTCGACGTGCTCGACC AGCCGATCTCCGACCATCTGCCGGTATCGGTGGAGATTCGCCTGCCGGACAACCTGCGCGACAAGGCCTTGGTCGTGCGCGGGGATGCCGGGAGTCCGCC
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| DNA Sequence for Gene |
>PAM18_5608
ATGAGTCGCGACGACGTCCAGCGCTGGAAAGACAAGTACCTGGAGAACATCGAGCAGCAGGAGCGCCTGCAACGGCGCTGGGATGCCCGCATCGACCTGC TGCGTCGCGGCCTGGTGCGTAGCAGTCTGGCGGCCGAAGGCAGCGACAAGGCGGTCGACCAGTGCATGAAGGAGCTGCGCGAGATCCTCCGTCGCGACGA CATGGACGCCGGCCTGTCGGGCCTGATTCCGCGCCTGGAAAAGGCCGTGCTCGACTCCGAACAACGCCGCCAGCAACGCACCCAGCAGAACATCGATGCT CTCGGCGAACTGGCCCAGCAGTTGCTGGCCCTGGACCTGCCGCGGGAACTGCGCAAGCCGCTGAAGCAGTTCGCCCGCGATATCGAGGAGCGCGCCCGGC AGTCGCGCGAGATTCCGATCCTGCTCAGCGAGCTGAGCAGGCTGCAACGCCAGGCGCTGGCCGAGCGCAAGGGCGGCGATGCCGAAGACGGTCGCCCGAG CCTGTTGCAACGCCTGTTCGGCGGCAAGGAGTCGGAAACCACCGCGGAGCCGAGCGCATCGGTGCCGTCCGTTGTGGCGGCAAGCAATACACCGATCCAA CCGGCGGCGGCCGCGCCGTCCCTGCCGGTCGCCGAGCACGACGAGGCGCCAGGCGGTCCGCCGCAGCCGTTGCCCGCCCGCACGGTCGCCGCCATCGAAA GCGCGCCAGCGGGTTGGGTCGGGGTCGCCGAGCGTGGCGAGCCGAACCAGATCCTGCTGGATGAGCCCCGGGAAATCTGGCTCGACAGCCTGCCGCTACC GGCCGGCCTGAGCTTTAGCGAGACGCTGGAAGAAGCGGGTGCGGAGCCGTCGCCCGCAATGCCGGCGGACGTTGAAAGCGCGCCCGAAGCTCCGGCCACT CCTGTGGATAACCTCGACGGGCAGGCGGTAGACGAGGCCTACGAACTGCCGCCGCCGATACCGGAGCCCGGCTACAGCGCGGTGGCGCCGCACATCGAGG CCAGCCTGCTGCGGCTGCTCGACGGCCTGTCCCTGCCGAGCAGCCACCAGCCCCAGGCCGAGGCGCTGCGGGAGCGGATCGATGGCAGCCTGAACTGGTA TGAGCTGGTGCCGGTACTCGACGACCTGGCGGTGCTGGTGCTGTCCCTGGCGGACAGTGGCCAGCGCGACTTCGAGGAATACCTGCGGCAACTCAACGAG CGCCTGGAAAGCTTCCTCGGCCACCTGGGCGACGCCCACGCCGGCTATACCGACGTGCTGGACAACGCGCGCGGCTTCGACCAATCGCTGCGTGAGCAGG TCAGTGGCCTGCAGGCCAGCGTGCAGCAGGCGACCGACCTGAACAGCCTCAAGCTGGCGGTGGACAGCCGGCTGAACGGCCTGCTTGCCTCCATGGACGA ACACCAGCGCGAACAGGCCGAGCACGAACAGGAGGTGTCCGGCCGCCTGCAGGCGCTGATGGAGCGGGTCAACAGCATGGAGCAGGATGCCAAGGCGTTC CACAGCCACCTGGAGGACCAGCGACAGAAAGCCCTGACCGATCCGCTGACCGGCCTGCCCAACCGCGCGGCGCTCAGCGAGCGCCTGGAACAGGAAGTGG CGCGCCGGCACCGGGACGGCGGCGATCTGCTGCTGGCGGTGCTGGACATCGACCACTTCAAGCGGATCAACGACGACTTCGGCCACCTGGCCGGGGACAA GGTGCTGAAGATCATTGCCGGCGAATTGCGCAAACGGTTGCGGCAGGCCGATTTCATCGCCCGTTTCGGCGGCGAGGAGTTCGTCGTCCTGCTCCCGGCC ACGTCCCTGGAAGCCGGCCGGCAACTGCTCGAACGGCTGCGCGCGGCGATCGCCGCCTGTCCGTTCCATTTCAAGGGCGAGCCCCTGAGCATCACCTGTT CCGCCGGCATCACCGCGTTCGAAGGCAACGAGGCCGGCGAAGCGGTTTTCGAGCGTGCCGACCAGGCGCTGTATCGAGCCAAGCGCGCCGGCCGGGACCG CCTGGAAGTGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGGCGACCAGCGCACATTCCGACGACTCGGGACGGGCTCGCCTGCAGGTGTTGCCGCGGCTCGCTAGAATGGTCCCGCCCGGTAGAATGACCGGCTGTC CCGCTCTGGAAACTCCCATGGATATGTTCGGCGTCGCCGTCCTGATCTTTCTGGTCACCGACCCCTTCGGCAACATCGCCGTGTTCCTCGCCGCGCTGAA AGGCGTCGCACCTGGGCGCCGCCTGCGCGTGGCGTTTCGCGAGCTGGCCTTCGCCCTGGGCCTGCTGCTGCTCTTCCTCACCCTCGGCGAGCACATCCTC AGCGGCCTCGGCCTGTCCCGCGAGGCGACCGGGATCGCGGGTGGCATCATCCTGTTCGTGATCGCCATGCGCCTGATCTTCCCGTCGCCCCAAGGGCTGC TCGGCGAAGTGCCCGACGGCGAGCCGCTGCTGGTACCCCTGGCCACCCCGGCGGTGGCCGGGCCCTCGGCGCTGGCGATGCTGATCACCCTGCGCACCAC
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| Amino Acid Sequence |
>putative GGDEF domain protein
MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDA LGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETTAEPSASVPSVVAASNTPIQ PAAAAPSLPVAEHDEAPGGPPQPLPARTVAAIESAPAGWVGVAERGEPNQILLDEPREIWLDSLPLPAGLSFSETLEEAGAEPSPAMPADVESAPEAPAT PVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNE RLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAF HSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPA TSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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