Pseudomonas aeruginosa M18, PAM18_5279 (rmlD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other M18 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG paf00523 Polyketide sugar unit biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf00521 Streptomycin biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.720 - - - 4 283 7.2E-106
Pfam PF04321 RmlD substrate binding domain IPR029903 RmlD-like substrate binding domain 3 296 4.9E-111
PANTHER PTHR10491 DTDP-4-DEHYDRORHAMNOSE REDUCTASE IPR005913 dTDP-4-dehydrorhamnose reductase family 2 297 2.5E-66
Gene3D G3DSA:3.90.25.10 - - - 159 286 7.2E-106
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 1 296 2.34E-95
CDD cd05254 dTDP_HR_like_SDR_e - - 3 286 2.99302E-97
NCBIfam TIGR01214 JCVI: dTDP-4-dehydrorhamnose reductase IPR005913 dTDP-4-dehydrorhamnose reductase family 3 295 1.3E-114

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.