Pseudomonas aeruginosa M18, PAM18_4406 (sbcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000175 3'-5'-exoribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11046
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004529 exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000977
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other M18 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG paf03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.1520.20:FF:000001 Exodeoxyribonuclease I - - 207 345 5.0E-51
SMART SM00479 exoiiiendus IPR013520 Exonuclease, RNase T/DNA polymerase III 4 196 3.9E-4
FunFam G3DSA:3.30.420.10:FF:000033 Exodeoxyribonuclease I - - 3 194 1.4E-92
CDD cd06138 ExoI_N - - 6 188 7.05063E-107
FunFam G3DSA:1.20.1280.70:FF:000001 Exodeoxyribonuclease I - - 352 412 2.5E-26
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 3 194 6.6E-69
PANTHER PTHR11046 OLIGORIBONUCLEASE, MITOCHONDRIAL IPR022894 Oligoribonuclease 4 428 8.3E-17
PIRSF PIRSF000977 Exodeoxyribonuclease_I IPR023607 Exodeoxyribonuclease I 1 475 0.0
Pfam PF08411 Exonuclease C-terminal IPR013620 Exodeoxyribonuclease I, C-terminal 205 468 1.9E-96
Gene3D G3DSA:1.20.1280.70 Exonuclease ExoI, domain 3 - - 352 411 3.8E-25
Pfam PF00929 Exonuclease IPR013520 Exonuclease, RNase T/DNA polymerase III 7 186 5.7E-25
Gene3D G3DSA:3.30.1520.20 Exonuclease ExoI, domain 2 IPR038649 Exonuclease I, SH3-like domain superfamily 207 346 7.4E-48
Gene3D G3DSA:1.10.287.1240 - - - 414 471 2.7E-5
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 5 451 8.18E-124

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.