Pseudomonas aeruginosa AZPAE12417, NQ26_RS05640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE12417 AZPAE12417_contig_6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACCAGCATCGCCACCAGCAGGTAGATGCCCAGCAGGCCTCCCACCACGCGCACCAGCCAGGGGCCGCCGAAGTAGGTACGCACATCATCCACGGAATT GTCCACGCGATCGCGCATGGTCCCACGACGCTTCTTCCAGTCCAGCATGGCAAGGGTCCTTAAAACAGCTCGATAGATGGGGGATTGGACCATGGCGAAC GCGTTCCGTGCCAAGCGCCAACCCTTCCAGGACGCCGAAAACCTCGGCATCGTCGGCTTTCAGCGTAGTGGAAGCCGGTTTTGTGCCGGAATGCTCAGTG AGAATTTTCCGAAACAGGCATAAGCATGCCGTAGTCCGTCGCACAAAGGCACCCACCAACAGGTGGGGATGACATTTGGAAAAGAAAAGGCTCCTCTCGT CAGCCGCCCAACGGCCGCTGGCTTTCATGGCGATAGGTGATAGCATAGAGCCATCATTCGCGGCGACGCTCTGCCGCGAAGACCACGAAAGAAGCGCGTC
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| DNA Sequence for Gene |
>NQ26_RS05640
ATGATGACCGAGCACGATGACCCGACCCTGGACCGCCTGAAGCACCACTTCGCCCAGCGAGTGATCAACCAGGCGCGCCAGGTTCTGGAGGTCTGGCAAC GCCTGACCCGCGCGGAGTGGAACAGCGACGGCATGGAAGAACTGGCCGACGCCACCCTGCGCCTGCAGCGCTACGCCGAACGCTTCGAGCAAGCCGAGCA TGCCCAGTTGGCCGGTGCCATCGACCGTACCCTGGACGTCGTCGAGGCCAACCGCGGCCGGCTTTCCAGCGAGTCGATCAGCGAACTCAACCAGTTGATG CAGCGCCTGTCGCGCACCGGCCTGCGGCATGGCGACCAGCTCGAGCACACCGTCCTGCCGCCGTTGCGCAAACCGGTCTACCTGGCACTGAAGGACCGCG AACGCGCCGAGCGCCTGGCCCAGCAACTGGAGTTCTTCGGTCTGCAGGCGCTGAGCTGCGAGACCGCCGACGCCTTCCGCGCCAGCATGCGCGAACGCTA CCCGGCGGCGATCGTCATGGAAGTCGACTTCGCCGGCCCCGACATGGGCCTGCGACTGGCCAGCGAGGCCCAGGCCGGCCTCGAACACAAGCTGCCGGTG CTGTTCTTCAGCGACAGCGAAACCGACACACCGACCCGCCTGGCCGCGGCCCGCGCCGGCGGCCAGGAATTCTTCACCGGCACCCTGGACGCCTCCAGCG TGCTGGAAAAGATCGAGACCCTCAGCCGCCTGAGCTTCTACGAGCCCTACCGGGTACTGATCGTCGACGACTCCCGGGCCCAGGCGCTGCACACCGAGAT GGTCCTCAACAGCGCCGGGATCATCACCCGCGCACTCACCGAGCCACTGTCGGTGATGGCCGAGCTGAGCGACTTCCAGCCCGACCTGATCATCCTCGAC ATGTACATGCCCGAATGCCTGGGCACCGAATTGGCCAAGGTGATCCGCCAGCACGAGCGCCACGTCAGCGTGCCGATCATCTACCTGTCCGCCGAGGACG ACTTGGACAAGCAGCTGGACGCCATGAGCGAAGGCGGCGACGACTTCCTCACCAAGCCGATCCGCCCGCGCCACCTGATCGCCACCGTGCGCACCCGCGC CAGCCGCGCGCGCAGCCTGAAGGCGCGGATGGTGCGCGACAGCCTGACCGGCCTGTACAACCACACCCATACCCTGCAACTGCTCGAGGACGCCCGTCTG CGCGCACGTCGCGATGGCCGTCCGCTGAGCTTCGCGATGCTCGACATCGACCACTTCAAGCAGGTCAACGACCGTTTCGGCCACCCCATGGGCGACCGGG TGATCAAGGGCCTGGCGCTGTTCCTCAAGCAACGCCTGCGCAAGACCGACCACATCGGCCGCTATGGCGGCGAAGAGTTCGCCGTGGTCCTTCCGGACAC CGACCTGGACGCCGCGCGCCTGGTGCTCGACGAGATTCGCCAGCGCTTCGCCGAGATCCACTACCCGGCGCAACCGACCGACCTGCGCTGCACCTTCAGT TGCGGCATCGCCGAGCTGACCCCGGACCTCGATATCAAGAGCATGGCCAAGCAGGCCGACGAAGCGCTGTACCGGGCCAAGCACGGCGGGCGCAACCGGA TCGAGGTATATCGTCCCGACGCTCGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCCTTTTGTCATCAGCCGGTAACCGAACGGAAATAACCTGCGGTCTCGCCGTTCCGTAGTCGGACGAGACTCGCCATGCGCCTCAAGCAACTCACCAA CCTCAACACCCTGCTCCTGCTCACCGTCTGCCTCGCCCTGGGAATCACCCTGTGGTGGTCGCAACGCGCCATGGAGCGGCCCTTCCAGTTGCTCGACCAG TACCTGGAGCTGTCGCAGCGCTTCGACGAACAGGTCGCGCGCAACATCCGCCAGTACCTCGGCAGCGGCGACGCCGTGCGCCAGCAGGCCGCGCTGCAAG CCCTGGAAAGCCTCGCCGAGGCCTTGCCGGAGCTACCGCCGGACCTCGCCCGGACCCTCGCGCCAAGCCTCGCGGAGTTGCGCGAATTCAGCGCCGGCGA CCTGCTCGCCGCCGGCAAGCTCGCCGGCGACCCGCAGGGCCTGCTGCTACAGGCCGAGCGCGACCTCACCGGCAACCTGGAACAATGGTCCGCCTACCTG
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| Amino Acid Sequence |
>diguanylate cyclase
MMTEHDDPTLDRLKHHFAQRVINQARQVLEVWQRLTRAEWNSDGMEELADATLRLQRYAERFEQAEHAQLAGAIDRTLDVVEANRGRLSSESISELNQLM QRLSRTGLRHGDQLEHTVLPPLRKPVYLALKDRERAERLAQQLEFFGLQALSCETADAFRASMRERYPAAIVMEVDFAGPDMGLRLASEAQAGLEHKLPV LFFSDSETDTPTRLAAARAGGQEFFTGTLDASSVLEKIETLSRLSFYEPYRVLIVDDSRAQALHTEMVLNSAGIITRALTEPLSVMAELSDFQPDLIILD MYMPECLGTELAKVIRQHERHVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIRPRHLIATVRTRASRARSLKARMVRDSLTGLYNHTHTLQLLEDARL RARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLALFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRFAEIHYPAQPTDLRCTFS CGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVYRPDAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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