Pseudomonas aeruginosa M18, PAM18_3347
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa M18 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTTACCTGGAGGGCTTCTCCGGCGAGATCAGCCAGCGCTTCCTGGCGCTGTCGCGGGCGCGCGACGTCCTGGCCGGGCGGCCGGAGGCGCGGGCGATG CTGGCGCTGGTCGACCAGGCGTTGCTGCGGATGGCCGACGAGCAGGGCCTGGAGATCGAACTCGGCCTGCGCATCGAGCCGCTGGCCGCCGAGGCCTCCG CCGCCGGTGTCGGCGATATCCAGGCGCTGCGCGATACCTACCGTGACGCGGTACTCGACTACCGGGGCCTGTCGGCGGCCTGGCAGGACATCCAGGCGCG CTTCGCCGCGACGCCGCTGGAGCGGGTCGTGGCCTTCCTGCAGAAAGCCCTGAGCGCCGACCTGGACAGTCAGTCGAGCCGGCTCGATCCGGTGAAGCTG GAGCGGGTCATGAGCGACATGCACAAGCTGCGCGTGCTCGGCGGCCTGGCGGAGCAGGTGGGGGCGCTCTGGCAGGTGCTGGTGACGGGGGAGCGGGGCC
|
|
| DNA Sequence for Gene |
>PAM18_3347
ATGGCATACGGGCCTTCTGAATTGACCGGCGCAGTCATCGCCTTGCTCGAGAAGCGCTGGGTCGGCGTCGCCGAGGTGCAGGCGTTGCTCGAGCCGTTGC CGCTGGCCGACGTCGCCCGGCAGATCCATTTCTTCCGCGAACTGAAGCGTCTCTACCGCCTGTTGCCGGTCGAAGTGTTCGGCGACGACGAGCAGCGCCA GAATCTTTTGAATGCCTGCCAGATGGCACTCGACCTGGCGATCGAGCGCGAAGAGGAGCAGCAGCATGGACTGGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGGCCGTCGCGCAGTTCTGCCAGGACCTGCGGGTGAGCGTACCGGCGCCGCTGGCGCGCGTGGTGCAACTGGATTTCGAGGACAGCGGCACCTTGCAG CTGGAACGCCATGGCGAACAGTTGTCGCTCTGGCTGGCCTGTGACCTGGCCTGGCACCAGGCCTATCGCGGCACCCTGCGGGCGTTGCGCCTGTGCCATG CGCGCGCGGCCGGGAGCCTGCCGCTGCGTTGCGCCTGGAGCGGCGAATCGCGCCTGCTGCTGTGCATCACCCTGGAAGCCCGGCAGGTCGGCATCCCGAC GCTGCACCAGGCCTTGCAGGCGCTGCGCTCGGCGCGCAGCGAAGTGCTCGCCGCATGAGCCGGGTCGGTGCCTGGCACATCGGCATCGAACGACTCGACC TGGCGCATGCCGAGCCGTTCGCGCCGCCCCTGCCGGAGCGCCATCTGCTGGCGCCCGACGGCCGGCCGGTGGAGACCCACGTCGCCAGCCTGTATCCCGC
|
|
| Amino Acid Sequence |
>putative protein in type III secretion
MAYGPSELTGAVIALLEKRWVGVAEVQALLEPLPLADVARQIHFFRELKRLYRLLPVEVFGDDEQRQNLLNACQMALDLAIEREEEQQHGLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|