Pseudomonas aeruginosa AZPAE12417, NQ26_RS10895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE12417 AZPAE12417_contig_12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTAGCGCTGCGTCCTGCCCATGCTCCAGCCGCCAGATCGAACGGCGGGCGATAGTCGGACAGGCCCTTTGATCATGACCGCCACGGTCGCGATACGGAAT CGCGCTCAGCCGCTACTTCCGCCCCACTGTTTCCGCCGCTTCCGCAGCCGAGCCCGTTATCACCGGAGTTTTTTCCTACAGCAGTCCTCCCAGTCCCCTA CGAAAACCAAGAAGTTCTACCGGCCAACGCCAGAAAACTACGATTGTCGCCGTTTCAGCCTCGCCCCAGGCTATCGCCCACTCGATTCTCCGCCTTGAAA CCGATCGTTCTGCGACATGCCTGCGGATATCGGCTTCTTTTCTCTGCAAGAACCGCGCTCCGGGCCGATTGACCATGCATCCAGCTTTTCCGCGTAACCA GGCTAGCCTTTCTTTCCCACCTCCCTCTCCAAAACCTTCCGGCAGTTCCACTTCGATCGTTCCATCCCTCAGGGCCGGACCGCTGCTCCGTACGGGCCTC
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| DNA Sequence for Gene |
>NQ26_RS10895
ATGGGAATGGCCATGTTGTCGTCCTGCCTTGCCAATGCCGCCCCGGATGCGGGGCAGGCGCTGCGTGACGTGGAAAGCCGACGCCTGAACCTGCCCGCGC CGGTGGAACTGGACGCCGAGCGCCCCAGCCCCGAGGACGGCGTATCACGGGCTGCCGAAGAGGGCGGCCCGACGGTGCTGGTCAAGCGCTTCCAACTCAG CGGCAACAGGCAGTTCGACGATCGACGCCTGCTGGCGCTCCTGCACGACCTGCCGGGCCAGGAACTCAATCTGAGCCAATTGCACGCCGCCGCCGCCCGC ATCGGCGATTTCTATCAGGAAAAGGGATATGTGCTGGCGCGCGCCTTCCTCCCGGCACAGGAAATCCAGGATGGAACGGTACGCATCGAAGTGCTCGAGG GACGCTACGGCAGGATCGAACTGCACAACACGTCCCGAACGCTGGACCGCGTTCTACTCCGCCCCTTGAGCGCACTCGAACGAGATACCGCGGTCCAGGG CTCGGAGCTGGAGCGTGCGCTTCTGCTCCTGAGCGACATTCCCGGCCTCCAGGCCAAAGGCACCCTGCTGCCGGGCCAGGCGCAGGGAACCACGGACTTG CGCGTCGAGGCCCGCCCCGGCCCGCTGGTCGGCGGCAGGCTGGAGGCAGACAACTATGGCGGCCGCTACATGGGGGAATATCGCCTGGGAACCACCCTCG ACTTCAACAGCCCGCTGCGACTGGGCGACCAGGCGAGACTGAGCCTGCTGGGCAGCGACCGGCACCAACGCTACTACCGTGCAGCCTATCAACTGCCCCT TGGTTCCCGAGGCACGCGCATCGGACTGGCCCACGCCGAGACGACCTATCGACTGGTACGCGATTTCTCGCGCCTGGATGCCCATGGCCGGGCCATTACC GACAGTCTGTTCGTCAGCCAGCCCCTGCTGCGTAGCCGCAGCTTAAGCCTGTCCACCCAGTTGCAATATGAAAACAAGCGACTTCGCGATGACCAGGAGC GTACCGGGAGGCATAGCCGCAAGGAGATCCGCCTGTGGACCGCCAGCATCAGCGGAAACGCCCAGGACCGCTTGTTCGGCGGTGGACAGAGCGGCTTCTC GCTGGCCTATGCCCACGGCCAGCTCGCCATCGACTCCGCCGAAGAGCGGCTGCTGGACCGCTACACCATCGGTACCGCCGGCAGCTTCGACAAGATCATG CTCAACGCCGTACGCCTGCAGCACCTGGGCGACCGCCTGCAGTTGTTCGCCCAACTCAACGCCCAGTGGAGCGGCGGCAACCTCGACAGCGCGGAACAGT TCGACATGGGCGGCCCCTACGGCGTTCGGGCGTTCCCCCTGGGCAGCTACAAGGGCTACGGCGACGAAGGCTGGCAAGCCAGTGCGGAGCTGCGCTACAG CCTGGCTCCGGGCTGGCAGCTGAGTTCGTTCGTCGACCAGGGCGCGGTGAAATTCCTCAAGCACCCCAACACCACGGAAGGCAATCGCAACCGCATGGCC GCCGTCGGCAGCGGCGCAACCTGGTACGGAACGGATCACCAGGTCAGCCTGACCGCAGCCTGGCCCCTGAGCCAGGAAAACAACATCGAGCCCGAGCGCA CTCCCCGGCTGTGGCTGCAAGCGACCCGCTACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGCTCCCGCCCGCCATGCCGGCGGGCCCCACTGAAAGGAAAAGCCATGAACAAGAGCTATACGCTGGTCTGGAACCAGGCCACAGGCTGTTGGAACG TCGCAAGCGAAGGTACCCGTCGGCGCAGCAAGAGCGGACGCGGCAAGGCGCTCGTAGTCGCCGGAGCGTCACTGCTCGGCCTGTTCTGCCAGGCCCCCGC CTTCGCCCTGCCCAGCGGCGCCACGGTCGTTTCAGGCGATGCCGGATTCCAGACATCCACCGATGGCCGGCATATGGTCATCGACCAGCAGAGCCACAAG CTGATCACCAATTGGAACGAGTTCAGCGTCCGTGCCGATGAGCGGGTCAGCTTCCACCAGCCGGGCCAGGACGCCGTCGCCCTGAACCGGGTGATCGGCC GCAACGGCAGCGATATCCAGGGGCGGATAGATGCCAACGGCAAGGTCTTCCTGGTCAATCCCAACGGCGTGGTCTTCGGCAAGTCCGCCCAGGTCAACGT
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| Amino Acid Sequence |
>membrane protein
MGMAMLSSCLANAAPDAGQALRDVESRRLNLPAPVELDAERPSPEDGVSRAAEEGGPTVLVKRFQLSGNRQFDDRRLLALLHDLPGQELNLSQLHAAAAR IGDFYQEKGYVLARAFLPAQEIQDGTVRIEVLEGRYGRIELHNTSRTLDRVLLRPLSALERDTAVQGSELERALLLLSDIPGLQAKGTLLPGQAQGTTDL RVEARPGPLVGGRLEADNYGGRYMGEYRLGTTLDFNSPLRLGDQARLSLLGSDRHQRYYRAAYQLPLGSRGTRIGLAHAETTYRLVRDFSRLDAHGRAIT DSLFVSQPLLRSRSLSLSTQLQYENKRLRDDQERTGRHSRKEIRLWTASISGNAQDRLFGGGQSGFSLAYAHGQLAIDSAEERLLDRYTIGTAGSFDKIM LNAVRLQHLGDRLQLFAQLNAQWSGGNLDSAEQFDMGGPYGVRAFPLGSYKGYGDEGWQASAELRYSLAPGWQLSSFVDQGAVKFLKHPNTTEGNRNRMA AVGSGATWYGTDHQVSLTAAWPLSQENNIEPERTPRLWLQATRYF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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