Pseudomonas aeruginosa M18, PAM18_0859 (cupB6)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa M18 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCAGCGCCGCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGCAACGCCGGTTCGATCCTGTCGGCGCGCAGCAGCAGTACCGTCAGCGGCGGCGGGCG CAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGACGCATCGTTTCGTCCATGTCGGAAGGCACCGTCAGTGGCGACTACTACGTCTCCATG GGCGGGCTGGCCGGCGTCAACCTGGGATCGATCAAGTACTCCGGCGTCAGCGGCAAGATCGACTTCAAGCCTCAGTCCCATTACGGCCAGATCTACGGTG CGCAGGTCGGCGAGAACCGTGGGGTCCTGGGCGGCAACTACGTGATCGGCGAGGCGGCGCTCCTGCCGCCTGCCGGTATCGACTACGGCAACATCTGGTA AGGCCGGCAGGGGAGGTCCCAGGCGGACCTCCCCTGCCGGCCGGGGCCGCTTTCGCCTGGAGTGCGGCCCTCTTCCGCAGGCGCAATCTTGGAGAGTTCC
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| DNA Sequence for Gene |
>PAM18_0859
|cupB6
ATGAGCATGAGGTTATTTCCTGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTCGTTCTCGGTCTCTGCTGCCTGACCGGCG GCCAGGCCTGGGCCCTGAACGACATCGCCCTGAACTGCTCGTTCGGCAATGGCCAGGGCATGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGC GAAAGGCACGGTGCTGTTCGCCAGGCCGGTGAGCCTGTTCCTGAGCTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCCTCGGGGGGAACTGG TCCGGGGTGGGCTATCCGGGGCCCTACGGCACGGTGGCGTCCGACGTCAAAGGCATCGGCTATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGG TGATTCCGGTCGACAACCAGCCCCATGCGCTGGACAAGCGAGTCACGAGCTTTTCCGGAAGCACGACCAGCGACTACCTACAGGAACTGGTCCTGACGGT CGACCCCGGCGAGTTGCCTGCCGGCGACCTGAAGGTAACCAGCGTATCCGGCAGCGCCACCCTGAGTCTCTGGGCGGTGGACAGGCTGAAGGGCGAAGCG TCCATCGGCAGCGTCCTGGCGGTGCCTGCGGACAACTACCCCACCGGGGTTTGCCGAAAGCCCTATTCGCTGATCGGCCCGGCCTCCATCGCTATCGGCG GCGGTCCCCCGCCGCCGCCGATCCCGAAGAAATGCAAGGTCGAGGTGGGACGGGAAATCAACGTCAAACTGGGTAGCGTCGCGTTGAAGAACTTCCCGCG GGTCAACGACACCTCCACGGAGCGCTCCTTCGATATCTCTCTCAGCGAGTGTGCGGCGCTGGCCAAGCCGGAAATCGCTTTCCGCGACAAGTATGTCTCG GCGCAGCAAGCGGACCCGACGATCCTCAGCTTGAAGAGCGGCGGCGCGGCGGGGTTCGGCATCGTCGTGAAGAACGGCCTGGACCAGCAGCGGATACGTT TCGACGGCACGCCCTACCCGATGCGGCGTGTCGGCGACAGCGCCGACCTCCCGCTGAGTGCCGCCTACATCCGTATCGGCGCGGAGGGCGAATTGAAGGC CGGGGTCGCCGACGGCGCCGCCGAGTTCACGTTTACCTTCCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGCCGCCGCTCTTTCCCCGGCGTTTCCCGCCCCGCCTCGGGAAGCGCCGTCGGCCGCTTTCGCGCCAGCCCTCGCGAAGGCTCGGCCCCTCACCTC CAGTGGTTGCAGATCGCCGAAGGCGCTCTGCATATCGCTCCGCTGCTCATCCTGGGTCTCGTGCGCACATGCCATTCCCGCACGCGGAATACCGATATTG CGTATGGGCGGAGGCTTTCTGAGGGATATGCAAGTTTCCTCGGTAGGATTTCGCGCAAATAAACGAACGCTATTTTCCAGGCGATAGTTTCAGGTTGTGG CGGAACTCTTTTTTCAAACTTTTTGCTGCTCTGGCTTGTCCGTTTCGTATTTCATAATTTTTCATAAGTGTCTGCGTAGGCGTTTTTCGGGGGCTGTTTC AAGTGTCTTTGTTGTTAGTTTACGAGGCGAAAAAATAGTAGTTTTACTATATTAAATATCGTCGGTTTCACTAGAAAATACACATGTTCACTTTGAACCG
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| Amino Acid Sequence |
>fimbrial subunit CupB6
MSMRLFPGRVSLRRRPGAQARQALVLGLCCLTGGQAWALNDIALNCSFGNGQGMPWRVVNELTSGTAKGTVLFARPVSLFLSYKPQASQEAHELVLGGNW SGVGYPGPYGTVASDVKGIGYRISVDAQDGVKRVIPVDNQPHALDKRVTSFSGSTTSDYLQELVLTVDPGELPAGDLKVTSVSGSATLSLWAVDRLKGEA SIGSVLAVPADNYPTGVCRKPYSLIGPASIAIGGGPPPPPIPKKCKVEVGREINVKLGSVALKNFPRVNDTSTERSFDISLSECAALAKPEIAFRDKYVS AQQADPTILSLKSGGAAGFGIVVKNGLDQQRIRFDGTPYPMRRVGDSADLPLSAAYIRIGAEGELKAGVADGAAEFTFTFP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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