Pseudomonas fluorescens EGD-AQ6, O204_RS137780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens EGD-AQ6 contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGATCTGCCACTGTTCATGAGCATCGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGCGCCCCGGTGCTGTCCGTACGTTGCGTGGCAGGCCCCA GTCGTCCGCGCGCCAGCCATGCCCATGACGCCAAGGCCTGGCGCCTGATAAGCCAGTTGTCGCTCAACTATCTGTCGTTGAGCGAACAGGGCCAGGGCGC CGCGGCCTTGCGCGAACTGTTGCGCCTGTATGGCGACAGCAACGACGCCGCCCTGCAATTGCAGATCGAAGGCCTGCGCGACGTCAGCAGCAAAGCGGTG ACCCGCCGCCTGCCGATGCCCGGCCCGATCGTATTTGGGCGCGGGCTGGAGATCACCCTGGAATTCGATGAAAACGCGTTTCGCGGCACCGGCGTGTTCC TGCTCGGTGCGGTGCTGGAACGCTTCCTGGCACGCTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
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| DNA Sequence for Gene |
>O204_RS137780
ATGGAAAGCCAAGCCCGGACGTCGTCCGACCCTGTGAGTACCCTGGATGCGATGCATCAGGAGCCCTGGGAATACGATTTCTTCCAGGCGCTGCGGCGTA TCGAGTGCGAATCGCCGGACCTGCCGCGCCTGGGCCATTCCCTGCGCCTGGCGGATGATCCGCTGCGCCTGGGGCAACAGGCCGACTGCACCTTCGCGCC GGCCACGCTGGCCTCGGTCGATCCCGGTGGCGACGGCAAGCCGGCGCGGCTCGAGCAGTTCTTCTTCGGCCTTGGCGGACCCAATGGCCCGCTGCCGCTG CATATCACCGAATATGTGCGCGAGCGCCAGCGCAACAACGCCGACAGCACCAGCAAGCAGTTTTTGGATGTGTTCCACCATCGCCTGCTCAGCCTGTTTT ACCGGGCATGGGCAGAGGCCCGGCCGACGGTCAGCCACGACCGCCCGGACGATGATTACTGGTCCGCGCGCCTCGCTGCGTTGAGTGGACGGGGCATGCC GAGCCTGCTGAATCAGGGACTCATCCCGGACACCGCGAAGCTGCATTACAGCGGCCATCTGTCCGCGCAAACCCGCTATCCCGACGGCCTGAAAGCCATT CTCGGCGAGTACTTCGGGCTGCCTGTGGAGATTGAAGAGTACGTCGGCCAATGGTTGGAGTTGCCCGAACGCAGCCGCGTCAGCGTGAGCGCCAACCGCC TGGGCGTGGACTTTTGCCTGGGCAGCTTCGTATGGGACCGCCAGCACAAATTCCGTATCCGCCTGGGCCCGCTCACGCTGGAGGACTACATGGGCATGCT GCCCGGCCAACAGCCGTTCAACGAGCTGGTGGCGTGGGTGGCCGAGTACCTGGGCCATGAACTGGACTGGGACCTCAACCTGGTTTTGCAACAACCTGAA GTGCCGGCACTGCAACTCAACGGCCAGTTCCGCCTGGGCTTCAACACCTGGCTCGGTAGCCCTGCGCACGACGCCAACGACCTAATCCTGGCCCGGCATT ACGCCGATCAGGCCACCACCTCAAGGAATCCAGAGCATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGTCGCGCCGCACTGTTCGGCAAACTCAACAGCGTGGCCTACAAGGCCATCGAAGCCGCCACCGTGTTCTGCAAGCTGCGGGGCAACCCGTATGTG GAACTGGCTCACTGGTTTCACCAGTTGCTGCAACTGCAGGACTCGGACCTGCACCGCATCATCCGTCAGTTCAACGTGGAGCCGGCGCGCCTGGCCCGTG ACCTCACCGAAGCGCTGGATCGTTTGCCGCGTGGCTCGACCTCGATCACCGACCTGTCCTCGCATGTGGAAGAAGCGGTTGAGCGCGGCTGGGTCTACGG CAGCCTGATGTTCGGTGAAAGCCAAGTGCGCACCGGTTACTTGGTGCTTGGTATCTTGAAGACACCCAGCCTGCGTCATGCGTTGCTGGGCTTGTCGTCG GAATTCGACAAGATCAAGGCCGAAGCCCTGAGCGAGCGCTTTGACGAATACGTCGGCGATTCGCCGGAAAATGCCCTGAGCGCAAGCGACGGTTTCAACG
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| Amino Acid Sequence |
>type VI secretion protein
MESQARTSSDPVSTLDAMHQEPWEYDFFQALRRIECESPDLPRLGHSLRLADDPLRLGQQADCTFAPATLASVDPGGDGKPARLEQFFFGLGGPNGPLPL HITEYVRERQRNNADSTSKQFLDVFHHRLLSLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLNQGLIPDTAKLHYSGHLSAQTRYPDGLKAI LGEYFGLPVEIEEYVGQWLELPERSRVSVSANRLGVDFCLGSFVWDRQHKFRIRLGPLTLEDYMGMLPGQQPFNELVAWVAEYLGHELDWDLNLVLQQPE VPALQLNGQFRLGFNTWLGSPAHDANDLILARHYADQATTSRNPEHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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