Pseudomonas fluorescens EGD-AQ6, O204_RS143970 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens EGD-AQ6 contig20, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGCGCCGGATAAGCGTGGCGGCAAGGTCTACGCATTGCTAAGGGAAACCCTCAGGAAAACCCGCAAAGTGGCCCTGGCCAATGTCGTGCTGCACACCAA GCAGCACCTGGCGGCCTTGATGCCGTTGGACTCGGCACTTGTGCTGGTAATGCTGCGCTGGCCTGCCGAAGTGCGAAGCCTGGACGAACTGGAGCTGGGC AGCGACGTGACCAAGCCGAGCCTGGCCAAGGGCGAGCTGGACATGGCCAAGCGCCTGGTGGACGACATGAGCGCCGACTGGCAGCCCGACGACTACCGCG ACAGTTTCCAGGAAAAAATCATGGCGCTGGTGGCCAAAAAGGCCAAGGCCGGCAAGATCGAGGATGTGGAAACCAGCAAAGACAGCGAAGAACGCAAGTC CGCCGATGTGATCGACCTGACGGAACTGCTCAAGCGTAGCCTGGCCGGCAAACCCACGAAGAAGCCTGCCGCGAAGAAATCCACCAAGGCCTCCTAAGTC
DNA Sequence for Gene
>O204_RS143970 |ligD
ATGTCCAAGCCCTTGAGCGAATACAACCGCAAACGTGATTTCGGGATAACCGCCGAACCGGCAGGCAGTGCGCCAGCAGGCAAACGCAAAGCCTCGGCGC TGTCGTTTGTGATTCAAAAGCATGACGCACGCAACCTGCACTATGACTTCCGCCTGGAGCTCGACGGCGTACTGCTCAGTTGGGCCGTCCCCAAAGGCCC GAGCCTGGATCCCAGCCACAAGCGCCTGGCCGTCCACGTCGAAGATCATCCCCTGAGCTATGGCGGCTTTGAAGGCAGCATTCCAGCGGGTCAGTACGGT GCAGGCGATGTCATCGTGTGGGACCGCGGCATCTGGCAGCCCCACGATGAGCCCCGCAAGGCCTACGCAGCCGGCAAGCTCAAATTCACCCTGGTCGGCG AGAAGCTCTCCGGTGACTGGGCGCTGGTGCGCACGCGCTTGAAGGGCAGCGGCGACAAGGAACAATGGCTGCTGATCAAGGAAAAGGACCCACAGGCGCG CTCGGCCGACGACTACGATATCGTCCAGGCCCAGCCGAACAGCGTGCTCAGCGATGCCTCAGTGGGCAAACCCAAGACGCGGGCCAAGGCCAGGAAAACC GCCCTCCCCGAGCAATTCACCCCACAATTGGCCACCCTGGTGGATCGTGCACCCGAGGGCGATTGGCAATACGAAATCAAGTTCGACGGCTACCGCATGC TCGCACGTATCCAAGCGGGTGAGGTGCGCCTGTTCACCCGCAACGGGCACGACTGGACCGAGTGTCTGCCGCGTCAGGTCAAGGCCTTGCAGGCACTGAA GCTCAAGGACAGCTGGCTGGATGGTGAGGTGGTCAGCCTCAATGGCGACGGCCTGCCGGACTTTCAGGCGCTGCAAAATGCCTTCGATATCGGCCGCAGC CTGGACATTGTCTACTACTTGTTTGACGCGCCCTTTCTCAATGGCGAGGACCAACGCCAGGCGCCGGTCGAGGAACGCCGCGCCGCCCTAAAGGAGGCAC TGGCCGGTAGCCGCAGCACATTGCTGCGCTATTCCGAAGCGTTTACCGCGCACCACCGGGACATCTTTGAAAGCGCCTGCGACTTGGCCCTCGAAGGCGT GATCGGTAAGCGCCTGGGCAGCCCGTACGTTTCCCGTCGAAGTGCCGACTGGATCAAACTCAAATGCCGGCTGTCCCAGGAATTCGTGATCGTCGGTTAC ACCCGGCCACAGGGTTCACGCAGTGGCTTCGGCGCGCTGTTGCTGGCGGTGAATAACGACACGGGCCTGGTGTACGCGGGCCGTGTGGGAACGGGTTTCG ATCAGGCGGCGCTGAAAGCCATTTACGCACAGCTCACACCGCTGGAGTGCGAGACGTCACCCCTGGCGAAACCACTGTCCAGCGCCCAAGCGCGTGGTGT GCATTGGGTCAAACCGACGTTGGTCGCGCAGGTGCAGTTTGCCGAGTGGACACGCGAAGGCGTGGTCCGCCAGGCAGCGTTTGTCGGGCTGCGCACCGAC AAGCCGGTGGCGCAGGTTGTTCATGAGCAACCACGCACGGTCCACTCAAAGAAGCCGGTGAAAAAAACCAGTCGCGATGTGAACATCACCCACCCAGACC GTGTGATCGATAAACACAGCGGCACACAAAAACAGCAACTCGCGCAATTCTACGACACCATCAGCCAATGGATTTTGCCCTTTCTGCGCCATCGTCCTGT CTCACTGCTGAGAGCGCCCGAGGGTATCGAAGGCGAGCAATTCTTCCAGAAACACTCGGAGCGCCTGGCCATTCCCAACATCAAGCAATTGGATCAGTCC CTCGATCCTGGCCATGCACGCCTGATGGAAATCGACAACGTCGGCGCATTGATCGGCGCAGTACAAATGGGCAGCGTGGAGTTTCACCCCTGGGGCGCCA CCTCGGACAAGATCGAAACCCCGGATCTGTTTGTGCTCGATCTCGACCCGGACCCGGCACTGCCCTGGAAAGCCATGCTGGAGGCCGCGCAACTCACCCT GTCGGTTTTGGATGAGCTGGGGTTGCAAGCCTTCGTCAAAACCAGCGGCGGCAAGGGCCTGCACCTGATCGTGCCGTTGGCGCGCCGAGACAATTGGGAG ACCGTCAAGGCGTTCGCCAAGGGCATCGCCCAGTTCATGACCGAGCAGTTGCCCGAACGTTTTACCGCGACATCGGGCCCCAAAAACCGGGTCGGCAAGA TCTTTATCGATTACCTGCGCAATGCCCGCGGTGCCAGCACCGTAGCGGCGTATTCCGTGCGCGCACGGCCTGGCTTGCCAGTGTCGGTACCGGTCAGCCG CGAGGAGTTGGAGGGGTTACGCGGTGCGCAACAATGGACCGTCGCCAATGTGCTGCAGCGCTTGAACGCTTTGAAAGCGGACCCCTGGGCGGGGTATGCC AATCGCCAGAAGATCAGCAAGAAGATGTGGGACAAACTGGGCGCCCATCCACCGGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATGGCGCCCACAAAGCGATCCTCAGATCAGCAGGAAAATAGCTGCCAATCCAGCGAAGATCGCCCATTTTTCCAGGTAGTAGCGCGTACGATTGCGCTTT TTCAGTTCCTTGCCACGCAGGCGGATCTTGTACAGACGCGTGAAGGCGCGATTGAGCCCGCCGGTCTTGTCACCCGCATCGTTGGGCGAACCTGCAGCCG CCATCACGTTACGGCTGAACCAGCGGTTGAACGCAGCCGCCCAGCGGTATTTCATCGGCCGCTCGATGTCGCAGAACAGGATGATGCGGTTCTGCTGCGT GGTGTTTTCGGCGTAGTGGATGTAGGTCTCGTCGAACATCACCGGCTCGCCATCACGCCAGTAATAGTTCTCGCCATCCACATTGATGTAGCAGCCAGGA TCGTTCGGGGTGTCCAGGCCCAAGTGGTAGCGGTACGAGCCGGCATAGGGGTCACGGTGGCGCACCAGCTTGGAGCCCGGCGGCAGCTCGGCGAACATCG
Amino Acid Sequence
>ATP-dependent DNA ligase
MSKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSWAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYG AGDVIVWDRGIWQPHDEPRKAYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNSVLSDASVGKPKTRAKARKT ALPEQFTPQLATLVDRAPEGDWQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRS LDIVYYLFDAPFLNGEDQRQAPVEERRAALKEALAGSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGY TRPQGSRSGFGALLLAVNNDTGLVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREGVVRQAAFVGLRTD KPVAQVVHEQPRTVHSKKPVKKTSRDVNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQS LDPGHARLMEIDNVGALIGAVQMGSVEFHPWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWE TVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWTVANVLQRLNALKADPWAGYA NRQKISKKMWDKLGAHPPE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site