Pseudomonas fluorescens EGD-AQ6, O204_RS147155
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens EGD-AQ6 contig18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGGGCAGCGCTTCCTGGAAATCTGGTCCGGGTTGCCGGTGCTGTACCTGCTGATCATCCTTGCGAGTTTTGTGCAACCCAACTTCTGGTGGCTGCTC GGCATCATGTTGCTGTTCTCGTGGATGAGCCTGGTGGACGTGGTGCGCGCCGAGTTCCTGCGCGGGCGCAACCTGGAATACGTGCGCGCCGCCAGGGCGT TGGGCATGCAGAACGGCGCGATCATGTTCCGGCACATCCTGCCCAATGCGATGGTGTCGACCATGACCTTTATGCCGTTCATTCTCACCGGCGCCATCGG CACCCTCACCGCCCTGGACTTCCTCGGCTTCGGCTTGCCGGCCGGTTCGCCGTCGCTGGGTGAACTGGTGGCCCAGGGCAAATCCAACCTGCAAGCGCCG TGGCTGGGCATGAGTGCCTTTGCCGTGCTGGCGATCATGTTGAGTTTGCTGGTGTTTATCGGCGAGTCCGCTCGCGATGCCTTCGACCCGAGGAAATGAG
|
|
| DNA Sequence for Gene |
>O204_RS147155
ATGAATCAGGACAATCTGATCGAAATCCGCGACCTCTCCGTCGAGTTCGTCACGGGCGACCATCACCACCGCGTGGTGAACAACGTCAGCTTCGACATCA AGCCTGGCGAGACAATCGCTCTGGTGGGCGAAAGCGGCTCGGGCAAATCGGTGACCGCCCATTCGATCCTGCGCCTGCTGCCCTACCCGCTTGCGCGGCA CCCCTCCGGCACCATCAACTATGCCGGGCAGGACTTGCTCACGCTGAAAGAAAAAACCATCCGCCATATTCGCGGCAACCGTATCGCGATGATCTTCCAG GAGCCGATGACCTCGTTGAACCCGCTGCATTCCATCGAGAAGCAGATCAACGAGGTGCTCGGCCTGCACAAGGGGCTGCAAGGTAAAGTCGCCACCCAGC GCACCCTGGAGTTGCTGGACCTGGTGGGCATTCCCGAACCGCACAAACGCCTCAAGGCCCTGCCCCATGAGCTGTCCGGCGGCCAGCGCCAGCGGGTGAT GATCGCCATGGCCCTGGCCAATGAACCGGAGCTGCTGATCGCCGATGAGCCGACCACGGCGCTGGATGTGACGGTGCAGTTGAAGATCCTCGAATTGCTC AAGGAACTGCAGGCGCGCCTGGGCATGGCGCTGTTGCTGATCAGCCACGACTTGAACCTGGTGCGGCGCATCGCCCACCGCGTGTGCGTGATGCAAAAGG GTTGCATCGTCGAGCAGGCCGATTGTGAAACGCTGTTCCAGTCGCCCCAGCATCCGTACACCCAGGAGCTGCTTGCGGCTGAGCCCAGCGGCGGACCTGC GAGCAATGCAATCGGCCCTCCACTGCTGGAGGTGGATAACCTGAAAGTCTGGTTCCCGATCAAGAAGGGCTTTTTGCGCAACACCGTCGATTACGTCAAG GCGGTGGACGGCATCAACTTCAGCCTGCCCCAGGGGCAGACCCTGGGCATTGTCGGCGAAAGCGGCTCGGGCAAATCCACCCTGGGCCTGGCGATCCTGC GGTTGATCGCGAGCAAGGGCGGCATTCGTTTTGAAGGCCAGCAACTGGATACACTCAGCCAGCAGCAGGTGCGCCCGCTGCGCCGGGAAATGCAAGTGGT GTTCCAGGACCCGTTCGGCAGCCTGAGCCCGCGGATGTGTGTCAGTGAGATCGTCGGTGAAGGGTTGCGCATCCACAAGATGGGTACGCCGGCCGAGCAA GAGGTGGCGATTATTGCGGCACTCAAGGAAGTGGGGTTGGATCCGGAGTCGCGCCATCGGTATCCCCATGAGTTCTCCGGTGGCCAGCGTCAGCGCATTG CCATTGCCCGGGCGTTGGTGCTCAAGCCGCGCCTGATCCTGCTGGATGAGCCGACGTCGGCGCTGGATCGCACGGTGCAGCGGCAGGTGGTGGAGTTGTT GCGCAGTTTGCAGGCCAAGTACAACTTGACCTATCTGTTTATCAGCCATGATTTGGCGGTGGTCAAGGCGCTGAGCCATCAGTTGATGGTGGTAAAGCAT GGGCAGGTAGTGGAACAGGGGGATGCGGCCGAGATCTTTGCTGCGCCGCAGCATGGGTATACGCGGCAGTTGTTGGAGGCGGCGTTTTTGGTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGTGTACCAATCCGTTTTTTCGGTAACGGATATGTACACCACCACTCCAACGGAACTTTGCCAAGAAATAACCGCCTGAATCCGGTAGGCTCACCCTTT TCATTCAAGGAGTTACTCCCCATGGCCAAAGCAACCGCCCGTCACATCCTCGTTTCCACTGAAGACAAGTGCAACGAACTCAAGGCCCAAATCGAAGGCG GCGCCGATTTCGCAGAAATCGCCAAAGCCAACTCCAGCTGCCCATCCAGCCGCGACGGCGGCAACCTGGGTTCGTTCGGCCCCGGCCAGATGGTCAAGGA ATTCGACACCGTCGTATTCAGCGCCCCGGTCAACACCGTGCAAGGCCCGGTGAAAACCCAGTTCGGCTACCACCTGTTGGAAGTCACCAGCCGCCAGGAC TGATCCTGTCTGTGCTGATGGTCTAAACGACGGCCCGCCTTTTGGTGGGCCGTTGTGCATGTGATGACTGGCGACGCTGATGCCGTTAGCGTACAAATCC
|
|
| Amino Acid Sequence |
>microcin C ABC transporter ATP-binding protein YejF
MNQDNLIEIRDLSVEFVTGDHHHRVVNNVSFDIKPGETIALVGESGSGKSVTAHSILRLLPYPLARHPSGTINYAGQDLLTLKEKTIRHIRGNRIAMIFQ EPMTSLNPLHSIEKQINEVLGLHKGLQGKVATQRTLELLDLVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KELQARLGMALLLISHDLNLVRRIAHRVCVMQKGCIVEQADCETLFQSPQHPYTQELLAAEPSGGPASNAIGPPLLEVDNLKVWFPIKKGFLRNTVDYVK AVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLIASKGGIRFEGQQLDTLSQQQVRPLRREMQVVFQDPFGSLSPRMCVSEIVGEGLRIHKMGTPAEQ EVAIIAALKEVGLDPESRHRYPHEFSGGQRQRIAIARALVLKPRLILLDEPTSALDRTVQRQVVELLRSLQAKYNLTYLFISHDLAVVKALSHQLMVVKH GQVVEQGDAAEIFAAPQHGYTRQLLEAAFLV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|