Pseudomonas fluorescens EGD-AQ6, O204_RS147640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens EGD-AQ6 contig17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAAAGACGCTGCCGTCGCCAAGGAAGAAACCTTTGGTCCGCTGGCACCGCTGTTCCGCTTCAAGGACGAAGCCGAAGTGATCGCGATGTCCAACGACAC CGAGTTCGGCCTGGCCTCTTATTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGTGGCTGAAGCCCTGGAATACGGCATGGTCGGCGTCAACACCGGG TTGATCTCCAACGAAGTGGCGCCGTTCGGCGGTATCAAGGCTTCGGGCCTGGGCCGTGAAGGCTCCAAATACGGGATCGAGGATTACCTGGAAATCAAAT ACCTCTGCCTGGGCATCTGACCAGCACGAGTTTGCCGCAAACGCAGAGGGCACGAGAGCGCTGTCCCTTTGCGTGTTTCACCGCGTAATTCGTAGTGGCC GGGAAAGCTGTGGCAGTCGATCATCGCATGCTGCCGTAGTTGCCTCCCCGCCACGTATTCCTTGGACCACGCCACCCGATGAGTGGCGAATGAGGACTTT
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| DNA Sequence for Gene |
>O204_RS147640
ATGAGCAAGACCAACGCATCCCTGATGAAGCGCCGCGAAGCCGCTGTACCACGCGGTGTTGGCCAGATTCACCCGATCTTCGCCGAATCCGCGAAGAACG CCACCGTGACCGACGTTGAAGGTCGCGAGTTCATCGACTTCGCCGGCGGTATCGCCGTGCTGAACACCGGCCACGTGCACCCGAAAATCATCGCGGCCGT GACCGAGCAACTGAACAAGCTGACTCACACCTGCTTCCAGGTCCTGGCCTACGAGCCTTACGTGGAGCTGTGCGAGAAAATCAACGCCAAGGTCCCAGGT GATTTCGCCAAGAAAACCCTGCTGGTCACCACCGGTTCCGAAGCTGTCGAAAACGCCGTGAAAATCGCCCGTGCTGCCACCGGCCGTGCTGGCGTGATCG CCTTCACCGGGGCCTACCACGGCCGCACCATGATGACCCTGGGCCTCACCGGTAAAGTTGTGCCTTACTCGGCAGGCATGGGCCTGATGCCAGGTGGCGT GTTCCGCGCGCTGTTCCCGAACGAACTGCACGGTGTGAGCGACGACGACGCCATCGCCAGCATCGAACGCATTTTCAAGAACGATGCCGAGCCGCGTGAC ATCGCCGCCATCATCATCGAACCGGTGCAGGGTGAAGGCGGTTTCTACGTCGCGCCCAAATCCTTCATGAAGCGCCTGCGCGAACTGTGCGACAAGCACG GCATCCTGCTGATCGCCGACGAAGTGCAAACCGGTGCCGGCCGTACCGGCACCTTTTTCGCCATGGAGCAGATGGGCGTTGCTGCCGACCTGACCACCTT CGCCAAATCCATCGCTGGCGGTTTCCCGCTGGCCGGTGTGTGCGGCAAGGCCGAATACATGGACGCCATCGCGCCAGGCGGCCTGGGCGGCACCTACGCG GGTAGCCCGATCGCCTGCGCTGCGGCCCTGGCCGTGATGGAAGTGTTCGAAGAAGAGCACCTGCTGGACCGCTGCAAGGCTGTCGGCGAGCGTCTGGTGA CCGGTCTGAAAGCGATCCAGGCCAAGTACCCGGTGATCGGCGAAGTGCGCGCTCTGGGCGCAATGATCGCGGTTGAGCTGTTTGACGACGGCGACACCCA TAAGCCAAACGCCGCTGCCGTTGCCTCCGTGGTGGCCAAGGCGCGTGAAAAGGGCCTGATCCTGTTGAGCTGCGGCACCTACGGCAACGTGTTGCGCGTA CTGGTCCCGCTGACCTCGCCGGACGAGCAGTTGGACAAAGGCTTGGCGATCATCGAAGAGTGCTTCTCCGAGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGAAATTGACCTGATCGACAGAAAAAACCCGCTTCGGCGGGTTTTTTTATGCCCATTGCCGCACATTCAGGCCGTGTTCATTGTACCTGGGCGTCTGC ATTGTCTAAGGTTGCAGCATTGCCGATGGAGCGTGCTGGATGACTGCTGTTGATTTACCCGCTGTACCCCGCGTGTTGATTGCCGAGGCGGACCCCTGGT CGCGGGACCTGCTCAAGCAGGTGTTGTTGAATGTGCGCTGCGACGCGCGGCTGGATGTGTGTGCCGATGGGCAGCACGCGGTGACGTTGCTGCGAGAAAA AAACTACGATCTGATCCTGGCCGATTGGGAGCTTCCGGGCGTCGATGGTCTGAGCCTGCTGCGCAACGTGCGCCAGCAGCGCCGCTCGCCGGCGTTGCCG TTCATTCTGCTGAGCAGCCGCAATGACAGCGCCAGCGTGCGCGAAGCCTTGCCCCTGGCGCCTACGGCGTACCTGACCAAACCGCTGAACATGGAAGGCC
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKTNASLMKRREAAVPRGVGQIHPIFAESAKNATVTDVEGREFIDFAGGIAVLNTGHVHPKIIAAVTEQLNKLTHTCFQVLAYEPYVELCEKINAKVPG DFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGVFRALFPNELHGVSDDDAIASIERIFKNDAEPRD IAAIIIEPVQGEGGFYVAPKSFMKRLRELCDKHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVMEVFEEEHLLDRCKAVGERLVTGLKAIQAKYPVIGEVRALGAMIAVELFDDGDTHKPNAAAVASVVAKAREKGLILLSCGTYGNVLRV LVPLTSPDEQLDKGLAIIEECFSEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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