Strain | Pseudomonas fluorescens EGD-AQ6 contig12, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GATCAGTGACGCGGACCAGCCAATCGGCGTGCCGTCATCGTGTATCACCCGCAGCCCCATGACCTGTTTGCCAGGCGAGCACCCCTGGTTGAGTACCTCG AACAGCACCATGTACCACCAACTGATCAGGAACAGCAGCAGTGAGCCCAGGCCGATGCCAACGTTGCCAAGCAAGGCCAATGGCACCAGCAGAATGCCCA TGACCACCGCGCGCAACCCCAGGTCGAAGGCAAAGGCCAGCACGCGCGGTACCAGGCCGGCGGGGCGCAGCGGCAGGTCAATGCCCTCCGGGGTCTCGAT CTGGTAGCGGGTGTCCAACGGGGCTGACGGCATCGCGATCCTTGGCAGTGCAGAGTGGCTGGAAGACACGGATGCTAGCAGTGTCGGCGGTGGAAGCAAC CATTCAAGGTTTTACTGGATGTTTGTACAGTTGATTTGGTGCTGGCCGTGGACGCCGTCCAGCGCCTAGACTTTGTCGCTCTTCAGTACAGGAATAGCCC
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DNA Sequence for Gene |
>O204_RS152070
|sbcB
GTGACCTCCATTTTCTGGTACGACTATGAAACCACCGGCATTAATCCGCGCAGCGATCGCCCGCTCCAGGTAGCTGGAATTCGGACGGACTTAGAGCTCA ATGAGATCGGCGAGCCGGTCAATCTTTATTGTCAGCCCAGCGACGATATCCTGCCCCATCCCGTTGCGTGCGCGATTACCGGTATCACTCCCGCAATCCT CGCGGAAAAAGGCCTGGCCGAGGCCGACTTCATGACCCGGGTGCATGCTCAACTGGCTGCTCCGGGTACGTGTGGCGCAGGTTACAACACCTTGCGATTT GACGATGAGATGACGCGCTACAGCCTGTATCGCAATTTTTTCGACCCTTACGCGCGTGAGTGGCAGGGTGGTAACAGTCGTTGGGATCTGATCGACGTGA TTCGCACCGCCTACGCGCTGCGCCCGGAAGGCATTGAGTGGCCGCAACAGGATGGGCGCGTCACGCTCAAGTTGGAGCGCCTGACCGAAGCCAACGGTAT CGACCATGGCCAGGCACACGATGCGTTGTCCGATGTGCGTGCCACGATTGCCTTGGCGCGACGGGTACGTGAGAAACAGCCCAAGCTGTACGAATGGCTG TTTCAGCTACGCAGCAAGCAGCGGGTGATGGACCAGGTGCGTTTACTGCAACCCATGGTGCATATCTCTGGGCGTTTTTCCGCCGAGCGTCATTACCTGG GGATTGTGCTACCGCTGGCGTGGCACCCCCGCAATCGCAATGCGCTGATCGTCTGCGATCTCGGGCTCGATCCCCAAGGGTTGCTGGACCTGGATGCAGA TACCTTGCGCCAGCGCCTCTACACCCGTCGTGAAGATCTTGCCGAGGGCGAGTTGCCGGTCCCGCTCAAGCTGGTGTACATCAATCGTTGCCCTGTGGTT GCTCCCTTGAACGTGCTTCGGACCGAAGATCGTGAGCGTCTGCACTTGGACATGAATATTTATCAGGAGCGCGCCCTGCGGCTAACTGACGCACAGGAAG TTTGGCGCGACAAGTTGGCGGCCGTTTATGCCGAAGAAGGTTTCGCGTCGAGTTCAGACCCGGAGCAACAGCTTTACGATGGCTTTATCGGCGATCGTGA TCGACGTTTATGTGAACAAGTCCGGACGGCCGAGCCAGCGCAATTAGCTCGCCAGCAATGGCCTTTTGATGATCATCGCTTGCCTGAATTATTGTTTCGT TATCGCGCGCGCAACTTTCCCGATACCTTGAACAGTGAGGAGCAACAACGCTGGCAGCTTTTCTGTCAGCAACGTTTGTCGGACCCGGAGTGGGGCGCGC CGAATACCCTTGCGGCATTTAAGCAGGCTAAACAAGAATTTGCAGTTAGTGCGACACCTTTTCAGGCCGAGGTGCTTGAGCGGTGGCAGGAATATGCAGA CTCGCTGGCCCATAAGGTAAATCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCGGTCTTCACTCAACAGACAGGCAATAAAAAACGCCAGCAGGCTGGCGTTTTTAATGTGTCGCGTATCAGGCGCAAGCCCGGCGAGGCTTAGCCCAGCA GGGTAGCCCAGCCTTCAACCACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGGGTTTTGTGGTTGCCACCTTTGGTTTCAATCACTTCGCCGTTGTG TGGGTTTTTGTACTGTTTGACTTTGCGGGCACGCTTGGTGCCGGTAGTTTTCACAGCGCCACGCGGTGCTTTAATTTTCGACTCTGGATCCAGCAGCGCG ATGATGTCACGCAGGGATTTGGAGTATTCACCCATCAGGGCGCGCAGTTTGCCTTCGAATTCCAGCTCGGTTTGCAGTTTGTCGTCTTGAGACAGATTCT TCAAACGGGCTTGCAGCTCTTTGATAGCTTCTTCGGTGGCACGGTATTCGTTGATCAGAGACATGTGGACTACCTTATGTAGAGCGCTGATTGACAGGGC
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Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRSDRPLQVAGIRTDLELNEIGEPVNLYCQPSDDILPHPVACAITGITPAILAEKGLAEADFMTRVHAQLAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVIRTAYALRPEGIEWPQQDGRVTLKLERLTEANGIDHGQAHDALSDVRATIALARRVREKQPKLYEWL FQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGIVLPLAWHPRNRNALIVCDLGLDPQGLLDLDADTLRQRLYTRREDLAEGELPVPLKLVYINRCPVV APLNVLRTEDRERLHLDMNIYQERALRLTDAQEVWRDKLAAVYAEEGFASSSDPEQQLYDGFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFR YRARNFPDTLNSEEQQRWQLFCQQRLSDPEWGAPNTLAAFKQAKQEFAVSATPFQAEVLERWQEYADSLAHKVNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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