Pseudomonas fluorescens EGD-AQ6, O204_RS155200
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens EGD-AQ6 contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGCCTGATGCAGCCCTGGCGTTTTATCCGCATCAGCGACCGTCCGTTGCGTGGGCAGATTCAACAACTGGTGGAAGAAGAACGCATACGCACCGCCG AAGCCCTGGGTGAACGCTCCGATGAGTTCATGAAGCTCAAGGTCGAAGGCATTCACGACTGCGCCGAAGTGCTGGTGGCGGCGTTGATGGATGACCGTGA GCGGCACATTTTTGGGCGGCGCACGTTGCCTGAAATGGACATGGCGTCACTGTCCTGTGCTATTCAGAATCTTTGGCTGGCGGCCCGTGTCGAAGGGCTG GGCATGGGCTGGGTCTCGCTGTTCGAGCCCCAGGCCCTGGCTGATCTGCTGGGTTTGCCACCCGGCGCGAAACCTTTGGCCGTGCTGTGCCTGGGGCCGG TGGCCGAGTTCTACCCGGCCCCGATGTTGCAACTCGAAGGCTGGACCGAGCCTCGGCCGCTGAGTGACATGTTGTATGAGAATGGGTGGGGAGTGAGTCA
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| DNA Sequence for Gene |
>O204_RS155200
ATGAGTGTGGCCTTGCTGTGTGTCGCTGCAGTCGCGCTGGATGCGCTGCTGGGCGAACCCAGACGCTGGCATCCGCTGGTGGCGTTCGGCAATTTCGCCG GGCGTATCGAGCAACGTTTCAATACCGGTGGTCGCGGCTGGCGCAGTCATGGCGTGACCGCGTGGGTTATCGCCGTGGTGCCGCTGACTCTGCTGGCTAC GGCTTTATCCTGGGCGCCGTACATCGGCTGGGTATTGGAGATCCTGGCGTTGTACTGCGCGCTTGGCATGCGCAGCCTTGGCGAGCATGTGATCCCGGTG GCCCAGGCCTTGCGCAGCGATGACCTGGACGAAGCGCGACAGCGCGTGAGCTACCTCGTAAGCCGTCAGACCAGTGAACTGGATAGCACCGAAGTCGCCC GCGCGGCCACTGAGTCGGTGCTGGAGAACGGCAGCGATGCGGTCTTCGCCGCGCTGTTCTGGTTTGTGCTCGCGGGAGTGCCGGGCGTGGTGCTTTATCG CCTAAGCAACACCCTTGATGCCATGTGGGGCTATCGCAACGAACGTTTTGAACGCTTCGGCTGGGCGGCGGCAAAGATTGACGACGTGCTGAACTACATT CCTGCACGCCTGGTGGCGTTGACCTACGCGGTACTGGGTAAGACTCGTCTGGCGCTCAAATGCTGGCGCACCCAGGGCCCGACCTGGGACAGCCCGAACG CTGGCCCGGTGATGGCGGCCGGTGCCGGCGCCCTGGGCGTGGAGTTGGGCGGCGCCGCCATCTATCACGGTGAAGTGCACCAGCGTCCGCAACTGGGCGA AGGCCCGGCGGCGGATGCCGATTCCATCGACCGGGGCTGGCAACTGGTACAGCGCGGCGTATGGTTGTGGCTGCTGATTCTATGCGCGGGGGCGCAATTC TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGTGGCCGGTTGCGCAGGGCGTCGATTCAGTACGGGATAGCCGAGGCCGATTGGCTCGACCTGTCCAGCGGCCTCGCGCCCTGGCCCTGGCCGATT CCCGAGATCCCGCTGCGGGCCTGGGCGCGCCTGCCGGAAACCGACGACGGCCTGGAGCAGGCCGCCAGCGAATACTATGGTGCTGCACACCTGTTGCCGG TGCCCGGCTCCCAGGCGGCCATCCAGTTGCTGCCACGTCTGCGCCGCGCTGGCAAAGTCGGCGTGTTGTCACCGTGCTATGCCGAACACGCCGAAGCCTG GCGCCGCGCCGGCTACGTGGTGCGCGAAGTGCAAGAGCAGGAAGTCGACTTCTTTTTGGAGGGGCTCGACGTACTGGTGGTGGTCAACCCCAACAATCCC ACCGGCCTGAACCTGGCCCCACAACGCTTGCTGGACTGGCATTCGCGGCTGGCCCAGCGGGGCGGCTGGCTGGTGGTAGACGAAGCGTTCATGGATGTCA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLCVAAVALDALLGEPRRWHPLVAFGNFAGRIEQRFNTGGRGWRSHGVTAWVIAVVPLTLLATALSWAPYIGWVLEILALYCALGMRSLGEHVIPV AQALRSDDLDEARQRVSYLVSRQTSELDSTEVARAATESVLENGSDAVFAALFWFVLAGVPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDVLNYI PARLVALTYAVLGKTRLALKCWRTQGPTWDSPNAGPVMAAGAGALGVELGGAAIYHGEVHQRPQLGEGPAADADSIDRGWQLVQRGVWLWLLILCAGAQF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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