Pseudomonas aeruginosa PA7, PSPA7_5164 (pilD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PA7 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAGGCCTATAAGCGATCGGAGAAATTACGCGATGCCACCGATCGCAACCTGTTGAAGCTTCCGGTCGTTGGCAACATCCTCTACAAATCCGCCGTCGCCC GCTACGCGCGCACACTTTCGACCACTTTCGCCGCCGGTGTTCCGCTGGTAGAAGCCCTGGATTCCGTAGCTGGAGCTACTGGCAACGTAGTCTTCAGAAA TGCCGTCAGCAGGATTAAGCAAGATGTTTCCACCGGCATGCAGCTGAATTTCTCCATGCGCACCACCAACGTATTCCCCAGCATGGCCATCCAGATGGCT GCGATCGGTGAGGAATCAGGCTCGCTGGATGAGATGCTCGGGAAAGTAGCCGGCTTCTATGAGGAGGAAGTCGACAATGCCGTCGACAACCTAACGACAC TCATGGAACCAATGATCATGGCAGTCCTCGGTGTGCTGGTCGGTGGTCTGATCATCGCCATGTACCTGCCGATCTTCCAACTGGGTTCCGTTGTATAAAC
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| DNA Sequence for Gene |
>PSPA7_5164
|pilD
ATGCCCCTTCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCGTCCTCGGCCTGCTGGTCGGCAGCTTCCTCAACGTCGTCGTGC ACCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAGGCGCTCGGGCTGCAGCCGGAGCCTGATCCGGCGATCTACAACCTGGTCCT GCCGAACTCCTCGTGCCCGCATTGCGGCCACGAGATCCGTCCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGC AAGGCCGCCATCGGCAAACGCTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCGGACGTGCTGGTGCTGCCGCTGCTCTGGCTGGG CCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGTGTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTC AAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCC TGCTGTCGTCGCTGGTCGGGGCCATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATTTGCAATTCGCCGGATTCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCAACCCTGGATACTTGGCCTCACAGGCGGCATCGGCAGCGGCAAGAGCGCGGCCGCCGAGCATTTCGCCGCCCTCGGCGTCCACCTGGTGGACGCCGA CCATGCCGCCCGCTGGGTGGTGGAACCGGGGCGCCCGGCCCTGGCGAAGATCGTCGAACGCTTCGGCGACGGCATCCTCCTGCCCGACGGCCAGCTCGAC CGCGCCGCCCTGCGCGAACGGATCTTCCAGGCGCCTGAGGAGCGGCGCTGGCTGGAACAACTGCTGCACCCGCTGATCGGCGCGGAGATCGTCCAGTACC TGGCCAGGGCCGAATCGCCCTACGCCATCCTGGTTTCGCCGCTGCTGGTGGAGTCCGGGCAGCGCCACATGACCCAGCGCGTGCTGGTGGTGGACACCCC GGAACACCTGCAACTGCAACGCACCATGCTCCGCGACAAGGTCTCCGAGGAGCAGGTGCGCTCGATCCTCCAGGCCCAGGCCCGGCGCGACGAACGCCTG
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| Amino Acid Sequence |
>type 4 prepilin peptidase PilD
MPLLDYLASHPLAFVLCAIVLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLQPEPDPAIYNLVLPNSSCPHCGHEIRPWENIPVLSYLALGGKCSSC KAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLF KLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVGAILGVIMLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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