Pseudomonas aeruginosa PA7, PSPA7_4938

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PA7 genes in this class
Motility & Attachment Other PA7 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pap02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 251 407 2.4E-37
CDD cd01949 GGDEF IPR000160 GGDEF domain 251 409 4.73832E-42
Coils Coil Coil - - 415 435 -
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 255 411 2.2E-38
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 422 677 1.3E-106
SMART SM00267 duf1_3 IPR000160 GGDEF domain 239 411 1.1E-43
SMART SM00052 duf2_2 IPR001633 EAL domain 421 667 1.4E-122
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 249 418 1.6E-46
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 422 684 1.2E-102
CDD cd01948 EAL IPR001633 EAL domain 428 667 5.04463E-117
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 249 409 2.1E-28
Pfam PF00563 EAL domain IPR001633 EAL domain 427 662 2.5E-75
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 210 681 0.0
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 426 676 3.79E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.