Pseudomonas fluorescens AU6026, MZ22_RS21260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Scaffold_290, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGCTGTTCGTGCAGGAAGGCCGCAAGGTATTCCGCGATGTTTGCCCGATGGTGGCCGAACTGATCGGCGAACACTTGGCAGAAAACCAGCTGAGTGTC ACTGATGTGAAGCGTTTCTGGCTGCACCAGGCCAACCTGAGCATGAATCACTTGATCGTGAAAAAACTGCTGGGACGCGAGGCATCGGTGGAAGAAGCGC CGGTGATCCTCGATACTTACGCCAATACCAGCTCGGCCGGCTCGGTGATTGCGTTTCACACTTATCAGGATGACCTGCCCAAGGGCGCGGTTGCCGTACT CAGCTCCTTTGGCGCCGGGTATTCGATTGGCAGTGTGATCCTGCGCAAACGCTGAGTGTGTGGCCGGACGCGGTCAACTGTGGGAGCTGGCTTGCCTGCG AAGGCATCGGCTCGGTGTGCCTGAATCACTGAGTTGTCTGGATCGCAGGCAAGCCAGCTCCCACATTGAGCGTATTTCCACGGCAATATTGAGGTAATCG
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| DNA Sequence for Gene |
>MZ22_RS21260
ATGGCAGCAGCGGACGATGCGCACCTGCTTGAACGCCTGCTCAAGGGTGAGCAGCGGGCTTATAAGGATTTGGTCAACACTTACCAGAGTGCGATGCGGG CAGTGGCGTATGCCATCGTCGGCCAGCGCCATGCCGATGAGGTGGTGCAAGATGCCTGGCTCTCGGTGGTGCGCAACCTGGCCAAGTTCGAAGGGCGATC GAGCCTCAAGACATGGTTATTGACGATCACTGCCAACTCCGCAAAGAGCCGTTACAAACAAAATCGTCGGGAAGTCCTTCTCGACGATTTGCCCTCACCC CACGGCACCATTGGCGATGAACGCTTCAGCCCGGATGATGGCCATTGGGCTGTCGCCCCTTACGCTTGGCACCAGGACACCCCGGAAGCGCTGCTGACCG AAGATGAACTGCGCAAATGCCTGGAGCATACGATTCTGAGTTTGTCCGAATTGCAAAGCAGTGTGCTGGTCCTGCGTGAACGCCAGGGCCTGGAACTGGA AGAAATCTGTAATCTTCTGACCCTTTCACTCTCCAACGTCCGTGTGCTGTTGCATCGAGCGCGGCTTAAAGTCTTCGCCACGGTGGAGCATTTTGAGGAA ACGGGCGAATGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGTAAAGAACAAGTAGCGCGTTCCAGTGACTATCTCGATGGGCAATTGACCTTTTGGGAGCGTCTGCTGGTGCGTCATCACTTGATGTTTTGTCCGAA CTGCCGGCGCTTTATCCGTCAGATGCGCCTGATGCAGGCAACGCTCAAGCGTATGCCGCAGGAGCCGGTGGAGGGTGTTGATGCGCTGGCCGAACAATTG GCGGCTGAGCGGCGTAAAGATATGTAGGAGCGAGCTTGCTGTGGCGAGGGAGCTTGCTCCCGCTCGACTGCGCAGCAGTCGCAGGCTTTTGGGGGCGCTT CGCACCCCAGCGCAAGCAAGCTTGCTCGCCACAGCAAGCCCGCTCCCACCTTTGATCTTCGTCATCCTCAACCTTGCATCGGCTCAATGATTTTTAAAGA ACAACACAAACAGGTGAAGTCATGACCACATCTCAACCCCTGGAACTGCTGGCACCCTTGTCCGGGGTTTTGCTGGCGCTGGATCAGGTCCCCGACCCGG
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| Amino Acid Sequence |
>RNA polymerase subunit sigma-24
MAAADDAHLLERLLKGEQRAYKDLVNTYQSAMRAVAYAIVGQRHADEVVQDAWLSVVRNLAKFEGRSSLKTWLLTITANSAKSRYKQNRREVLLDDLPSP HGTIGDERFSPDDGHWAVAPYAWHQDTPEALLTEDELRKCLEHTILSLSELQSSVLVLRERQGLELEEICNLLTLSLSNVRVLLHRARLKVFATVEHFEE TGEC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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