Pseudomonas fluorescens AU6026, MZ22_RS21050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Scaffold_290, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATAGAGCTGAAAGCCTTGCCCTGCCTAGCTTCAAGCCCTCAAGAAGCCCCTCATCAAGCGCTAACCAATTGAAGCAAAAGCGCTTTTCTTCGATTCACA GGTTGACACACTCGCGTTCCTCTGTAGAATGCCGACACACAGACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTC AAATCCGGCTCCCGCAACCAAACATCAAAAAAGGCTACTCGAAAGAGTGGCCTTTTTTGTATCTGGCGAAAAAGTTCTTCTGAAACAATGGCATGGCATC TTTCATGAAACCGTAGACGGTTTGCAGAGTCCATCTCATTGCACGCTATGCTCAATGCTCAAGCGCTACCCCTCTACGACCAATGGCCGCAGTCGCCGCG CCCGGTGATCCGCGTTAATATTTGTAATTATTTTGTCCATAGGGATTGGTAACTTGGCTGGATACCTCCATCCTGTCGCGCACAATCCACGAGGTGATTG
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| DNA Sequence for Gene |
>MZ22_RS21050
ATGCGCGCCAACTCGTCTGAACCACAAGACACCGTCACAGCAGAACAACCGATCACTCCCACCCGTTTGCGGTGGCTGGACCTGTTGAGCAAGTATCGCC AGCCCATCGGCCTGGCCGTGACGCTCCTGCTGTTTGCAATCGCCCTGATCGCCTGCCGGCACCTGCTGCTGGAGCTGGACCTCTACGCCCTGCACGATTC GATCCTGGAAGTGCCCAAGCCTGCGCTACTGGGGGCCTTTGCGGCGGCAGTCGCCGGTTTTGTGATCCTGCTCGGCTATGAATTCTCCGGCGCGCGTTAT GCCGGCGTGCAATTGCCCGCCAAGACCCTGGCCCTGGGTGGTTTCACCGCCTTTGCTATCGGCAACGCCATTGGTTTGTCGATGCTCTCGGGCGGTTCGG TGCGTTACCGTTTATATGCACGCCATGGCATCGGCGCCTCGGAAGTGGCGCACATGACCGTGTTCGCCAGCCTGGCCCTGGGCTGTGCGCTGCCGCCGCT GGCCGCGCTGGCCACGTTGAGCAACTTGCCAGCCGCCTCCACTTACCTGCATTTATCGCAAAGCCTGCTCGGCGGCATTGCCGGCGCCGTGCTGCTGTTG TCGGCCCTGCTGTGCATCGGCATCTATCGCCGCCGCCTGCCGGAACAGCCCTACCCCGACAACCTGCTGGTCAAGGCCGGGCGCCGCACCCTGCGCCTGC CTGGCCGACGCCTGACTTTCCTGCAACTGATCATCACCGCACTGGACGTCGCCGCAGCCGCTACCGTGCTGTATCTGCTGTTGCCCGAAGCGCCGCCCTT CGGCCCGTTCCTGTTGGTGTACCTGCTGGCCCTGGCCGCCGGTGTGCTCAGCCATGTGCCGGGCGGCGTGGGCGTATTCGAAGCGATCCTGCTGGCGGCC TTTGCCGACAAACTCGGTGCCGCGCCCCTGGCTGCTGCCTTGCTGCTGTACCGCATGATCTACGTGGTGCTGCCACTGTTGATCGCTTGTGTATTCCTGC TGGTCAACGAGGCCCAGCGCCTGTTCCAGACCCAGCAAAGCCTGCGGGTAGCGTCGGGGCTGGCAGCGCCAGTATTGGCCGTCCTGGTTTTTTTGTCCGG CGTGGTCCTGCTGTTTTCCGGCGCCACGCCAGAGATCGACTCACGCCTGGAAAACATCGGCTTCCTGATTCCCCATCGTCTGATTGACGCGTCGCACTTC GGTGCCAGCCTGATCGGTGTGTTGTGCCTGTTGCTCGCCCAGGGCCTGCGCCGGCGGTTGTCGGCCGCCTGGATGCTGACTATGGTGTTGCTGCTGGTTG GCGCCCTGCTCTCGCTGCTTAAAGGCTTCGACTGGGAAGAAGCCAGCCTGATGACCATGACCGCAGTGCTGCTGGCCATCTTCCGCCGCTCGTTCTACCG CGCCAGTCGCCTGACCGAGTTGCCGTTTTCGCCGCTGTACCTGGTGGCCAGTGTCTGTGTGCTCGGCGCCTCGATCTGGCTGCTGCTGTTTGCCTATCAG GACGTGCCCTACAGTCACCAACTCTGGTGGCAGTTCACCCTCGACGCCAACGCCCCGCGTGGTTTGCGTTCGCTGCTCGGCGCCGCCGTGTTGCTGGTGA TCGTGTCGCTGACCTGGCTGCTGCGCACGGCACGCCCGGTCATCCACCTGCCGACCCCGGAAGAACTGGAGCGCGCCAGCAAGATCCTGATGGCCTCGTC CCAACCTGACGGCGGCCTGGCGCTCACCGGCGACAAGGCGCTGCTGTTTCACCCCAACGATGAAGCCTTCCTGATGTATGCCCGTCGCGGGCGTAGCCTG GTGGCTTTGTACGACCCGATCGGCCCGACCCAACCCCGCGCCGAGATGATCTGGCAGTTCCGCGACCTGTGCGACATCCACCACGCCCGTCCGGTGTTTT ACCAGGTACGCGCCGAGAACCTGCCGTATTACATGGACATCGGCCTCACCGCGATCAAACTGGGTGAAGAAGCCCGCGTCGACCTGAAACGCTTTGACCT GGAAGCCAAGGGCAAAGAAATGAAGGATTTGCGCTACACCTGGAACCGTGGCACCCGGGACGGCCTGTCCCTGGAAATCTGCGAACCGGGCAAGGCGCCG ATGGATGAATTAAAAGTCATCTCCGATGCCTGGCTTACAGGTAAGAATGTGCGGGAAAAGGGCTTCTCCCTGGGCCGTTTCAGCGATGACTACCTCAAGC ACTTTCGTATCGCGATCATTCGCTTCGAAGGGCGCCCGGTGGCCTTCGCCAATTTGCTCGAAACCTACAATCATGATCTGGCCAGCCTCGACCTGATGCG TGCCCACCCGGACGCGCCCAAGTTGACCATGGAGTTCATGATGGTGGGCCTGATTCAACATTATAAGAGCCACGACTACGCGCGCTTCAGCCTCGGCATG GTGCCGTTGTCGGGCTTGCAACCGCGCCGTGGCGCACCGCTGACCCAGCGCCTGGGCTCGATGGTGTTCCGCCGTGGCGAGCAACTGTATAACTTCCAAG GTTTGCGCCGCTTCAAAGACAAGTTCCAGCCCGACTGGGAACCCCGTTACATGGCCGTGCCCGCAGGACTGGATCCGCTGGTGGCATTGGCCGATACCGC CGCCCTGATCGCGGGCGGCTTGACTGGATTGGTGAAACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGATTCGACGCTCCTGGCGGTATGTATTGGCTTTAGTGGTGCTGCTTGCGCTGATCGCGGCGGGTGGCTTCTGGTACTGGAACCGCCCTGCTCCGCAACC GACCCTGGAGCACTTGCCCCAGGCCGACGGTTCGGTAATGACCCGCGTAACCCCGGCCAGCAACGCAAAAGCCCGCGTGGCCGTGGCGGTGATGGCCGAC GAAACCCTGACCGACAGCCAACTGATTGCCCTGAGCCAGGGCGGTTCAGCGCAACTGGTTCAGGTGGTGCTGCCAAAAGATGACTGCGCACTGCAGGAAA AAGCCCTGCAAGGCGCCCTGGCCCAGTTGAAAGGCCCGGCAACCCTGGTCAGCGGCATCGGCCCTGGCGCCGCACTCGCCTGGCGCTGGCTGGCCACCCA GAACGACGACAAGGCCAACGCCATCTCCGTGGGCTTCGCCCTGAAACAGGAAGGCTGCAACGACCCGCTGCCGAAAACCGCCGCCCATGGCAGCTGGCTG
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| Amino Acid Sequence |
>membrane protein
MRANSSEPQDTVTAEQPITPTRLRWLDLLSKYRQPIGLAVTLLLFAIALIACRHLLLELDLYALHDSILEVPKPALLGAFAAAVAGFVILLGYEFSGARY AGVQLPAKTLALGGFTAFAIGNAIGLSMLSGGSVRYRLYARHGIGASEVAHMTVFASLALGCALPPLAALATLSNLPAASTYLHLSQSLLGGIAGAVLLL SALLCIGIYRRRLPEQPYPDNLLVKAGRRTLRLPGRRLTFLQLIITALDVAAAATVLYLLLPEAPPFGPFLLVYLLALAAGVLSHVPGGVGVFEAILLAA FADKLGAAPLAAALLLYRMIYVVLPLLIACVFLLVNEAQRLFQTQQSLRVASGLAAPVLAVLVFLSGVVLLFSGATPEIDSRLENIGFLIPHRLIDASHF GASLIGVLCLLLAQGLRRRLSAAWMLTMVLLLVGALLSLLKGFDWEEASLMTMTAVLLAIFRRSFYRASRLTELPFSPLYLVASVCVLGASIWLLLFAYQ DVPYSHQLWWQFTLDANAPRGLRSLLGAAVLLVIVSLTWLLRTARPVIHLPTPEELERASKILMASSQPDGGLALTGDKALLFHPNDEAFLMYARRGRSL VALYDPIGPTQPRAEMIWQFRDLCDIHHARPVFYQVRAENLPYYMDIGLTAIKLGEEARVDLKRFDLEAKGKEMKDLRYTWNRGTRDGLSLEICEPGKAP MDELKVISDAWLTGKNVREKGFSLGRFSDDYLKHFRIAIIRFEGRPVAFANLLETYNHDLASLDLMRAHPDAPKLTMEFMMVGLIQHYKSHDYARFSLGM VPLSGLQPRRGAPLTQRLGSMVFRRGEQLYNFQGLRRFKDKFQPDWEPRYMAVPAGLDPLVALADTAALIAGGLTGLVKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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