Pseudomonas fluorescens AU6026, MZ22_RS20785 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Scaffold_290, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCAATGATGCCGACCAGCCAATGGGCGTGCCGTCATCCTGTACCACGCGCAGGCCCATGACCTGCTTGCCCGGCGAGCAGCCGTGGTTGAGCACTTCG AACAACACCATGTACCACCAGCTCACCACGAACAGCAGCAGCGAACCCAGCCCGATCCCCACATTGCCGAGCAGCGCCAGCGGCACTAGCAGGATCCCCA TGATGATCCCTCGCGCGCCCAGGTCGAATGCAAAGGCCAATGCCCGAGAGGGCAGGCCAGCAGGACGCAGGGGCAGGTCGATGCCCTCCGGCGTTTCTAT CTGATAGTGGGTATCCAAAGGCGTTGATGGCATTGCGATCCTTGGCAGTGCGAGGCGACTTGAGAGACACGGATGCTAGCAGTGTCGACGGTGGAAGCAA CCATTCGAGGGTTTTCTGGATATTTATACAGTCAGGTATCGCTGGCTCCCAACGCCTTGCAGCGCCTAGACTTTGTCGATCTTCAGCACAGGAATAGCCC
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| DNA Sequence for Gene |
>MZ22_RS20785
|sbcB
GTGACCTCGATTTTCTGGTACGACTATGAAACCACTGGCATCAACCCGCGCAACGATCGCCCGCTCCAGGTAGCCGGGATCCGCACCGACCTTGAGCTCA ATGAGATCGGTGCGCCGATCAATCTTTATTGCCAGCCCAGCGACGATATCCTGCCTCACCCGGCAGCGTGCGCGATCACGGGCATCACGCCGGGTGTCCT CGCCGAGAAGGGCCTTGCCGAAGCCGATTTCATGACTCGGGTGCACGCCGAACTGGCCGCGCCAGGTACCTGCGGCGCCGGCTACAACACCCTGCGATTC GACGATGAAATGACGCGCTACAGTCTGTACCGCAATTTTTTCGACCCGTATGCGCGCGAGTGGCAGGGCGGCAACAGCCGGTGGGACTTGATCGATGTGA TGCGCACTGCCTACGCCCTGCGGCCGGAGGGGATCAACTGGCCCGAGCAGGACGGGCGTGTGACCCTCAAGCTCGAACGCTTGACCGAGGCCAACGGCAT CGACCATGGCCAGGCCCATGACGCGTTGTCGGATGTGCGTGCAACCATCGCCCTGGCGCGGTTGGTCCGAGAGAAACAACCGAAGTTGTATGAATGGTTG TTTCAACTGCGCAGCAAGCAACGGGTCATGGATCAGGTGCGGTTGCTGCAACCGATGGTGCATATCTCCGGGCGTTTTTCCGCCGAGCGCCATTATCTGG GCGTGGTCTTGCCCCTGGCCTGGCACCCGCGCAATCGCAATGCCTTGATCGTCTGTGACCTGGGGCTCGATCCACAAGGGCTGTTGGACCTGGATGCGAC GACGCTGCGTCAGCGTCTTTACACGCGCCGCGATGAGCTAGCCGAAGGTGAACTGCCGGTTCCGCTCAAGTTGCTGCATATCAACCGCTGCCCGGTGGTT GCGCCGTTGAAGGTGCTGCGCCCTCAAGACCTCGAGCGCCTTCAATTGGATAAGGAAGCTTGCCTCGCGCGGGCGCTGCGGCTAACTGACGCACAGGAAG TTTGGCGGGACAAGTTAGCGGCCATTTATGCCGAGGAAGACTTTGCGTCAAACTCGGACCCGGAGCAGCAGCTCTACGATGGTTTTATGGGTGACCGTGA CCGCCGTTTATGTGAGCAAGTTCGCATGGCAGAGCCCGCGCAATTAGCCCGTCAGCAGTGGCCGTTCGATGATCATCGTTTGCCGGAATTATTATTTCGC TACCGGGCGCGTAACTTTCCTGAAACCTTGAACAATGAGGAGCAACAACGCTGGAAACTTTTCTGTCAGCAACGTTTGTCGGATGCACAGTGGGGGGCGC CGAATACCCTCTTGGCATTTAAGCAGGCGCGTGAGGAGTTGGCGGTTAGTGCTACATCGTTTCAGTGCCAGGTACTGGCGCAATGGCAGGACTATGTGGA TTCCTTAGCGGCGCGCCTGAATCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCATAACTACAGAATATTCAGACAATAAAAAACGCCAGCAAGCTGGCGTTTTTCATGTGTGACGTATCGGGTGAACGTCCGACCGGGCTTAGCCCAGC AGGGTTGCCCAACCTTCAACTACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTTTTGTGGTTGCCACCTTTGGTTTCAATTACTTCGCCGTTGT GCGGGTTTTTGTACTGCTTGACCTTGCGAGCACGCTTGGTGCCGGTAGTTTTCACAGCGCCACGCGGTGCTTTAACTTTCGACTCTGGATCCAGCAGCGC GATGATGTCACGCAGGGATTTGGAGTATTCACCCATCAGGGTGCGCAATTTGCCTTCGAATTCCAGCTCGGTTTTCAGCTTGTCGTCTTCGGACAGGTTC TTCAAACGGGCTTGCAGCTCTTTGATAGCTTCTTCGGTGGCGCGGTATTCGTTGATCAGTGACATGTGGACTACCTTATGTAGAACGCTGATTGACAGGG
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEIGAPINLYCQPSDDILPHPAACAITGITPGVLAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVMRTAYALRPEGINWPEQDGRVTLKLERLTEANGIDHGQAHDALSDVRATIALARLVREKQPKLYEWL FQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGVVLPLAWHPRNRNALIVCDLGLDPQGLLDLDATTLRQRLYTRRDELAEGELPVPLKLLHINRCPVV APLKVLRPQDLERLQLDKEACLARALRLTDAQEVWRDKLAAIYAEEDFASNSDPEQQLYDGFMGDRDRRLCEQVRMAEPAQLARQQWPFDDHRLPELLFR YRARNFPETLNNEEQQRWKLFCQQRLSDAQWGAPNTLLAFKQAREELAVSATSFQCQVLAQWQDYVDSLAARLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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