Pseudomonas aeruginosa PA7, PSPA7_4630

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00787
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00787
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pap02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.170 - IPR038404 TRAP transporter solute receptor DctP superfamily 25 329 2.4E-92
PIRSF PIRSF006470 DctB IPR004682 TRAP transporter solute receptor, DctP family 1 329 3.0E-124
FunFam G3DSA:3.40.190.170:FF:000001 TRAP dicarboxylate transporter, DctP subunit - - 26 328 3.4E-128
Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 IPR018389 TRAP transporter solute receptor DctP 31 312 1.1E-106
CDD cd13674 PBP2_TRAP_SBP_like_1 - - 28 325 0.0
NCBIfam TIGR00787 JCVI: DctP family TRAP transporter solute-binding subunit IPR004682 TRAP transporter solute receptor, DctP family 31 268 3.9E-74
Coils Coil Coil - - 253 273 -
PANTHER PTHR33376 - IPR018389 TRAP transporter solute receptor DctP 1 327 6.8E-123
NCBIfam NF037995 NCBIFAM: TRAP transporter substrate-binding protein DctP - - 30 301 6.0E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.