Pseudomonas fluorescens AU6026, MZ22_RS26160

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU6026 Scaffold_190, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGTGCGCCGGTATTGGCCGTGCGGTGCGTCGCCGGGCCAA GCCGCCCGCGTGCCAGCCATGCGCATGACGCCAAGGCCTGGCGCCTGATCAGCCAGTTGTCGCTCAACTACCTGTCCTTGAGCGAAGAGGGCCAGGGCGC CGGCGCCTTGCGCGAACTGCTGCGCCTGTACGGCGACAGCAATGACGCCGCCCTGCAATTGCAGATCGAAGGCCTGCGCGAAGTCAGCAGCAAGGCGGTG ACCCGACGCCTGCCGATGCCTGGCCCGATTGTGTTTGGCCGCGGCCTGGAAATCACCTTGGAGTTCGATGAAAACGCGTTTCGCGGCACCGGCGTGTTCC TGCTCGGTGCAGTGCTGGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
DNA Sequence for Gene
>MZ22_RS26160
ATGGAAAGCCAAGCCCGGACGGCGTCCGACCCTGTGAGAACCCTGGACGCGATGCACCAGGAGCCCTGGGAATATGACTTCTTCCAGGCATTGCGGCGCA TCGAGTGCGAAACGCCCGAGCTGCCACGCCTGGGCCATTCCCTACGCCTGGCCGATGACCCGCTGCGCCTGGGGCAGCAGGCCGATTGCACCTTCGCACC CGCCACCCTCGCCTCGGTCGACCCCGGTGGCGACGGCAAGCCGGCGCGGTTGGAGCAGTTCTTTTTCGGCCTCGGCGGCCCCAACGGGCCGCTGCCGCTG CACATCACCGAGTACGTGCGCGAGCGCCAACGCAACAACGCCGACAGCACCAGCAAGCAGTTCCTGGATGTGTTCCACCATCGCTTGTTGACCCTGTTCT ATCGGGCCTGGGCCGAGGCGCGGCCGACGGTCAGCCATGACCGCCCGGACGATGACTACTGGTCCGCCCGCCTCGCCGCCCTGAGTGGCCGCGGGATGCC GAGCCTGCTCAATCAAGGGCTCATCCCCGATACCGCAAAGCTGCATTACAGCGGCCATCTGTCGGCGCAAACCCGCTACCCGGATGGCTTGAAAGCGATC CTCAGCGAGTACTTCGGCCTGCCGGTAGAGATCGAGGAATACGTCGGCCAATGGCTGGAACTGCCCGAACGCAGCCGCGTGGGGGTCAGCGCCAACCAGT TGGGCGTGGACTTCTGCCTGGGTAGCCACGTGTGGGACCGCCAGCACAAATTCCGCATCCGTCTGGGCCCGCTCACGCTGGATGACTACATGGGCATGCT GCCCGGCCAACAGCCGTTCAACGAGCTGGTGGCGTGGGTGGCCGAGTACCTGGGCCATGAATTGGACTGGGACTTGAACCTGGTTTTGCAACAACCCGAA GTTCCGGCGCTGCAACTCAACGGCCAGTTCCGCCTGGGCTTCAACACCTGGCTCGGCCAACCTGCGCATGACGCCAACGACCTAATCCTGGCCCGGCATT ACGCCGACCACGCCACCACCTCAAGGAATCCAGAGCATGGGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATCAGTCGCGCCGCACTGTTCGGCAAACTCAACAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAGTTGCGGGGCAATCCGTATGTG GAACTGGCCCACTGGTTTCACCAGTTGCTGCAACTGCAGGACTCGGACCTGCACCGCATCATCCGCCAGTTCAACGTGGAGCCGGCGCGCCTGGCCCGTG ACCTCACCGAAGCCCTGGATCGCCTGCCGCGTGGCTCGACGTCGATCACCGACCTGTCCTCCCACGTGGAAGAAGCCGTGGAGCGCGGCTGGGTGTATGG CAGCCTGATGTTCGGTGAAAGCCAGGTTCGCACCGGTTATCTGGTGCTGGGCATCTTGAAGACACCGAGCCTGCGCCATGCGCTGCTGGGTTTGTCCGGC GAGTTCGACAAGATCAAGGCCGAGGCCCTGAGCGAGCGCTTTGATGAATACGTCGGTGACTCGCCGGAAAATGCCTTGAGCGCCAGCGATGGCTTCAATG
Amino Acid Sequence
>type VI secretion protein
MESQARTASDPVRTLDAMHQEPWEYDFFQALRRIECETPELPRLGHSLRLADDPLRLGQQADCTFAPATLASVDPGGDGKPARLEQFFFGLGGPNGPLPL HITEYVRERQRNNADSTSKQFLDVFHHRLLTLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLNQGLIPDTAKLHYSGHLSAQTRYPDGLKAI LSEYFGLPVEIEEYVGQWLELPERSRVGVSANQLGVDFCLGSHVWDRQHKFRIRLGPLTLDDYMGMLPGQQPFNELVAWVAEYLGHELDWDLNLVLQQPE VPALQLNGQFRLGFNTWLGQPAHDANDLILARHYADHATTSRNPEHG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site