Pseudomonas fluorescens AU6026, MZ22_RS26015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Scaffold_190, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGGCTGATTGACTCTTCCCAAAACAGCTGCAAGGGCCTTACATTGGCACTTGTAGCGGTTTTGCGAAGGCCTGCGAAAAATCAGCGCTTCCCTAAACG CTGGTGATTTTTTAAACTGCTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATCTTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACTGGCGGCAAAGAGCCTCTGGTCCAGTGGG AAAACGACAAGCCTACCGTTGTAGCCCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCCGAAATCGTTGAAGACGAACCGCT GTTTGCAGCGTTCGAAGGCGAGTCCAACGAGGACGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCCATCGGCAGGAGTTCACACT
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| DNA Sequence for Gene |
>MZ22_RS26015
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGGCCTACCTCGGCGAAGACCAGGTCAACCTGGTTCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGACGTAGCGGCGAGGCGTATGTCACCCATCCTCTTGCGGTGGCCAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCGATGCTGCATGACGTGATCGAAGACACCGGCATTGCCAAGGAAGCGCTCAGTGCGCAATTTGGCGAAACCGTGGCCGAACTGGTCGATGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGAGACATTCGGGTGATCC TGGTCAAGCTGGCCGATCGGCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAGCGCCGACGCATCGCCAAGGAAACCCTGGAAATCTATGC GCCCATCGCCAACCGGCTGGGCATGCACGCCATTCGTATCGAATTCGAAGACCTGGGCTTTAAAGCCATGCACCCCATGCGTTCGGCGCGCATCTACCAG GCGGTCAAGCGCGCACGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTGAGCCATTGCCTGGCGATCGACGAGATCGAGGGCGAGGTCA GCGGTCGGCAGAAGCACATCTACGGCATCTATAAAAAGATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTATGCGTTCCGGATCATTGT CGACAAAGTCGATACCTGCTACCGCGTACTGGGCGCTGTACATAATTTGTACAAGCCCCTGCCGGGCCGCTTCAAGGACTACATCGCAATTCCCAAGGCC AACGGCTACCAGTCGCTGCATACCACCCTGTTTGGCATGCACGGCGTGCCGATCGAGATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATTGCCGCCCACTGGCTGTACAAGTCCAGCGGTGACGAGCAGCCCAAAGGCACCCATGCCCGTGCGCGCCAATGGGTCAAGGGCGTGCTGGAAATGCA GCAACGTGCCGGCAACTCCCTGGAATTTATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCCTACGCGGTGCACACCGATGTCGGCAACAGCTGCATCGCCTGTCGCATCAACCGGCGCCTGGCACCGC TGTCCGAACCGCTGCAAAGCGGTTCCACGGTGGAGATCGTCAGCGCACCGGGCGCTCGCCCGAACCCGGCCTGGCTCAACTTTGTGGTCACCGGCAAGGC ACGTACGCATATTCGCCACGCGCTGAAATTGCAGCGTCGCTCCGAATCCATCAGCCTGGGCGAACGCCTGCTGAACAAGGTGCTCAACGGCTTCGACAGC GCCCTGGACAAGATTCCGCAAGAGCGCGTGCAAGCGATGCTCCACGAGTACCGCCAGGAAACCATCGAAGACCTGTTGGAAGATATCGGCCTGGGCAACC GCATGGCCTACGTGGTTGCGCGCCGCCTGCTGGGCGAAGGCGAACAGTTGCCGAGCCCCGAAGGCCCACTGGCGATTCGCGGCACCGAGGGCCTGGTGCT CAGCTACGCCAAATGTTGCACGCCGATCCCGGGCGACCCGATTGTTGGCCACTTGTCCGCCGGCAAAGGCATGGTGGTGCACCTGGACAACTGCCGCAAC ATCACCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGAGTGGAGCTGGAAC ACCAGCGCGGCCTCATCGCCCTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAAAAGTTGCGCGCCTTGACCGGTGTGATCCGCATCACCCGCATGCGT GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGATCCATTACAAGGAGTCATTCATGACCAAGACAGTTATCACCAGCGATAAAGCTCCAGCCGCCATCGGCACTTATTCCCAGGCGATCAAGGCGGGCA ACACCGTCTACATGTCCGGCCAGATCCCGCTGGACCCAAAGACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCGTACAGGTCTTTGAAAACCTCAA GTCCGTGGCTGAAGCTGCCGGTGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTCAGCCACTTTGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGAACAACCTTACCCAGCCCGCGCCGCCATCGGCGTTGCCGCCCTGCCAAAGGGTGCACAGGTTGAGATGGACGCCATTCTGGTCATCG AGTAAAACACCCGGCGCAGCCCAAACAGGCTGCGCCGACTTCGTTTCAGAAGGATTTCGTAATGCGCAAAGCGCTTGTAGCCTCCTCGTTGCTCGCCCTG
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSAYLGEDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALDKIPQERVQAMLHEYRQETIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ITEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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