Pseudomonas fluorescens AU6026, MZ22_RS24785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Scaffold_190, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACGGCGCGCTTGGCTTTACCCTGGCCTGCGGCAGCGGCCAATTGCTGGCCGAATTGATCGACCAGCGCACCCCTTCCATTGATATGCAGGGCCTGACGC CCCGCGCCGCTTGAGGATGCAGCCGTGACCATTACCCGAATCAACAGCAACGAACGACTCAGCGGTGCCGTGACGTTCAAGGAACTGGTGTTCCTTTCGG GCCAGGTGCCCGGCGACGGCCTGGATGTGGCCACCCAGACCCGGGAAGTGCTGGCCAGGATTGATACGCTGTTGGCCGAGGCGGGCAGCGATAAGGACCA CTTGCTCAACGCGACGATCTACCTGAAGGACATCGCTGCCGGTTTTACGCCGATGAATGAAGTCTGGTCCGCATGGCTCTCGCCAGGCATGGCGCCCACG CGCACTACCTTGCAAGCAGAGCTGGCGCGGCCGAGTGTGCTGGTGGAAATCAGCGTGATTGCAGTCCGTAAATAACCTCAAAGACCCACGGAGAATAACA
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| DNA Sequence for Gene |
>MZ22_RS24785
ATGAAAACAATCCTGTTGACCGGCTGCGCGCTGGGGCTTTTGTTGAGCGCACAGGCCCATGCAACCGAAGCGCCACTGGAGGGCACTTTGAGCAAGATCG CCAGCGCCAAGTCCATCACCCTTGGCTACCGCGATGCGTCGGTGCCGTTTTCCTACGTGGGGGATAACAGTGGTAAACCGATGGGCTACTCGGTGGACCT GGCAAACAGGATTGTCGAGCGTATTCAGCAGAAAACCGCAGTGGGCGACCTCAAGGTGAAGTACAACCTGGTGACGTCCCAAACCCGCATCCCGCTGGTG CAGAACGGCACTGTCGACCTGGAGTGCGGGTCCACCGGCGTGACGGCTGAGCGCCAGAAGCAGGTGGCATTCTCCTACGAGTTTATCTACGTAAAGGGCC AGTTGCTCACGGCCAAGGACAGCGGGATCAAAGGCTTTGCCGACCTTGCGGGCAAGAATGTGGTGACCACTGCCGGCACCACCAATGAGCGCTTTCTCAA AAGTTATAACGCTGAACACAAAGCCAATATGTTCGTGATCAGCGCCAAGGACCATGGCGAAGCGTTCAAGATGCTCGAGACTGGCCGGGCGGTAGCGTTC TATATGGACGACGCGTTGCTCTACGGCGAGCGCGCCAAGGCCAAGGACCCGCATCACTGGGTGGTCGTCGGCGAGGAGCAGTCGCGGGAGATCTACAGCT GCATGGTGCGCAAGGATGACCCGCAGTTTCTCGCGGTGGTCAACGAAACCCTGGGCGAGCTGTACCGCTCGGGAGAGATCAACGGGATTTACCAGCGCTG GTTCGAGCAGCCGATTCCGCCCAAGGGCTTGAACCTGGAGTTCCCGATGACCAGCGAGTTGAAAGCGATCATCGCCAAGCCGGTGAGTGACCCAGTGGAG TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGGGGTAACCCGATAAAACTGTGGGAGCAGGCAAGCCAGCTCCCACAGTTGATTGGGTTTACAGGGTGAGGTTAGAAGTCGCCCCAGAGTTGTTGGG CGATGGATAGTGCGACGACGGGCGCGGTCTCGGTACGCAACACCCGCGGGCCGAGGCGAGCGGCGTGGTAGCCGGCGCCCTGGGCGGTCTCGACTTCATT GTCGGTGAGCCCACCCTCGGGGCCGATCAAGAACGCCAGGCTCGATGGCTTGGCGTGGCTGATCATCGGTTCTGCCACCGGGTGCAGCACCAGCTTCAAA TCCGCCTCGGTTTGCTTGAGCCAGTCTGCCAGCAAGAGCGGGGGGTGAATCACCGGCACCGTCGAACGCCCACATTGCTCACACGCACTGATTGCCACCT GGCGCCAGTGCAGCAAGCGCTTGTCGGCGCGTTCGTCCTTGAGGCGCACTTCGCAGCGCTCGCTGAAGATCGGTGTGATGGCATTGACGCCCAGTTCAGT
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| Amino Acid Sequence |
>ABC transporter
MKTILLTGCALGLLLSAQAHATEAPLEGTLSKIASAKSITLGYRDASVPFSYVGDNSGKPMGYSVDLANRIVERIQQKTAVGDLKVKYNLVTSQTRIPLV QNGTVDLECGSTGVTAERQKQVAFSYEFIYVKGQLLTAKDSGIKGFADLAGKNVVTTAGTTNERFLKSYNAEHKANMFVISAKDHGEAFKMLETGRAVAF YMDDALLYGERAKAKDPHHWVVVGEEQSREIYSCMVRKDDPQFLAVVNETLGELYRSGEINGIYQRWFEQPIPPKGLNLEFPMTSELKAIIAKPVSDPVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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