Pseudomonas fluorescens AU6026, MZ22_RS09140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU6026 Scaffold_180, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACCTGTACTAATTGCAACCTGCCGCGCCAACTGCGTGCGGGTGATATCAATCTGCCCGGTGAGCAGACGCCGGAGTCGTTGACGTTCCGCAACATCACCG CGCCAACGGCGAGCTTCGCACCACCACTGGACCAAGACTATCTGTGGAAGCTCATCAGCAACATGTCGCTCAACTATTTGTCGTTGACCGATATCAATGC CTTGAAAGTGATTCTGGAGTCCTACGATTTGTCGCGTTATTACGATCGCCAGGCCCTGAAGGTCAGCCAGAAAAGACTGGGCGCCTTGCTCTCCATCCGC CAAGAGCCAGTGGATCGCCTGCACCGCGGGCTGCCCATCCGAGGCGTGCGGATCGATCTGACGGTCGATTCCCAGGGCTTTGTTGGCCAGGGCGACCTGT TTGTATTCGCTTGCGTTCTAAATGAGTTTTTTGCGCTTTATGCCAGCCTCAATTCGTATCACGAGTTGCGGGTCATCAGCACACAAGGAGACGTGTATCT
DNA Sequence for Gene
>MZ22_RS09140
ATGGCCATCCCAGATGGGACAGCAACCCCAGCTCTGACTCATCTTTGTCGCGTTATCCGTGAGTTCACGTTGTTTCAGGCGGTTCTGCAGGTTATCGAGC ATTTGCGCGAGGCCCATCCGCTTTTAGATGACGACGCGCTGTACGACCAGTTGGAATTCCAGGCCAACCCTGGTCTCGGGTTTGCCGCGCACGATATTGA CCGGGTGGAGTTCTTTATGGAACAGGGCCAATTGCGCGCACGCCTGCGTCTGAATGTGTTGGGGTTATTCGGTGCGGGGTCACCACTGCCCGCGTTTTAT GGTGAGCAGGCATTCGCCGAGCGCTCGGGTGGCAACCCGACTCGGGATTTCCTCGACCTGTTCCACCATCGGCTGCACCGGCTGATGCTGCCGATCTGGC GCAAGTACCGCTATCGGGCGTGTTTCCGGGCAGGTGCCAACGATAGGTTTTCCGAGCAGATGTTTGCCTTGATGGGGCTAGGCGCAGCTGCGATACGGGG CGTTTGCCAAGTCGATTGCAAGCGCCTGCTGCCTTACCTTGGCTTGCTGAGCTTACGGGTGCATTCGGCGGCGTTGATCGAGTCGGTCCTGCGTTACTAC TTCATGCACGAGGCGTTGTTTCTAGAGCAATGGGTTGCACGTACGGTCGAGGTCTGCCAGACGCAGCGCAATCATCTGGGGCGGGCCAATAGTGCTCTTG GCGATGACCTGGTTCTGGGGCACCGCATCGCTGACCGCAGTGGCAAGTTCAGGGTGCATGTCCGGGCGCTGTGCTGGGAGCGTTTCCACGATTTTCTGCC CACCGGAAGTGCCTACCAACCACTGCGTTCGCTGGTGCGCCTGACCCTGCGGGACCCCTTGGACTACGACCTGAGCCTGATGTTGGCGCAGGGCCAGATC AAGGCCTTGCATATTGGTGAGAACACAGTTTGCCGCCTGGGCTGGACCACTTGGCTGGCGCATGAACAGGCCGATGGCGTGGTCACGCTGACCCACAATT CATCAGGGATTAATGACCATGACTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGCGGACCTGCAACAACTGATCGGCGCGCTGTCGGCAAGACCGACACAGTGCTGGCCCTGGCGTGTTTCGACGAGTGCAGCCCATGACCGATAACCTGCT TGGTAAAGAGGCCGACCCGCTGGTTTATGTCGACGCGCTGTCTGCCTGTTTCACACGCTTGGGGTTCGAGCGCGATGAACATTCGTTACTTGAAGGATGC GTTACCGGGGCGGCACGGCTGAGCCAGTGTGAGCTCAGCCAATTGTATCTGCTGGACGAAGTGACCGGCCGGCTTGAACTGACCGCTCAGCATATGGCCC AGATACCATCGCTCTCCGTTGCGCCTGCGTGTCCCGATCAGTCCCACCAAGGGCTGCTGCACGACACCTTGAACCAGGGCTCTGTCTTGAGTCTGGAGGA TGTGCATGAAAGTGGGTATGACACCCGCTTCCTCCCGGCAATGGCGATACCCTGGCGTGCGCTATTGATCGTGCCGCTGCTCAGCCGATGCAAACGTATG
Amino Acid Sequence
>type VI secretion protein
MAIPDGTATPALTHLCRVIREFTLFQAVLQVIEHLREAHPLLDDDALYDQLEFQANPGLGFAAHDIDRVEFFMEQGQLRARLRLNVLGLFGAGSPLPAFY GEQAFAERSGGNPTRDFLDLFHHRLHRLMLPIWRKYRYRACFRAGANDRFSEQMFALMGLGAAAIRGVCQVDCKRLLPYLGLLSLRVHSAALIESVLRYY FMHEALFLEQWVARTVEVCQTQRNHLGRANSALGDDLVLGHRIADRSGKFRVHVRALCWERFHDFLPTGSAYQPLRSLVRLTLRDPLDYDLSLMLAQGQI KALHIGENTVCRLGWTTWLAHEQADGVVTLTHNSSGINDHD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site