Pseudomonas fluorescens AU6026, MZ22_RS09115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Scaffold_180, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGTGATGGAGAGATACGCGGGTGTTGGCATGACGGGTTTCCTTGCCTGATTGAGTAGGATTGCCGAACAGCAAAAGCGCTGAAGGGGCAGAGGCCTA TAACAAGAAGCGTGCCTGAAAGTATGAAAGCCAATGAAATAAAGACGAAGGCGGCTCTGTGTTCGTTTGTTGAGAGCTTATTGTCGAGCGGTAGGTGGAT TTCAGCGCTATTAGTTTCACGCCTGCGCGCACTTAGTTGCTCATGCCCTATAAGTTGTAAATGCGCGGCTGTCGGAGATAAAGCGTGGATTTTTCGATGA AGAGGTGCGCAAATAGTTGCGCATTCCTTTATTTGTTGGGTGTGTAGGACGTTTCTTAAGTTCCGTTCCGTTACTTGCTGATTGTTTTTGTCGTGGCTAA GGTTCACTCACTTCGATGAGTTTTTAATGGAAGTTCAAGGGCGTTTCGACAATGGCGTTAAGTCCTCCTATTTACCTCGGACGGATGTGTGCAACTCAAA
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| DNA Sequence for Gene |
>MZ22_RS09115
ATGGCTTATTCAGAAGAACTTTATGTTCATTACCGCAAGCTTGCACGGACAGCATGTTGCTCAAGCAGTTTTGTTGGTAGTGACGTGCGTTTTTCGAGCG AGTTTGAAGCGCTGGAGGCCGAGCTTGGCAAAGCCCAGTCTATCCATGTTGCGGGCCAGCCGGATTGGCAGAAGGTCAGCGAAATCAGCGAGCATTTGCT GCGTGATCACTCCAAGGATCTACGCGTCGCCGTCTGGTTGGTCTGGGCCCTGTATCAACGTGATTCATTTGCTGGATTGCTGGCCGGTCTCGGTTTGCTG CGTGACCTGTGTGAACTCCATTGGGAGCAGGTTTACCCTGGCAAGCTACGAACCCGTGCTGCGGCGTTTGGCTGGCTGGTGTCGCGCCTTGAGCAAGCGT TTGCACTCAACCCGTCGCTCAGCGATCAACGGCCTTTATTCCAGGCCCTGTTGGAACACCTGGCATGTCTCGACCAGCTATGGGGCGAACAACTTGGAAG CGATGCACCTTTGCTGCTGCCGATTCGCCGGCAATTGTCGGAGCGCTTGGCGCAGGGTGTGTCCGAACCTGGCGGTGTAGCGACCGTCATTGCCCAGGTC AAGCAGACGACTCAGTTGCTGAGTCCCGGGCAACCGATCAATAACGAAAAAGACGCGCACAGACTGCTGCGCACTTTACAGGAGCAGGCCCGCCCGTTAT GTGCCTGGTGGTTGCGCCAGGACGCAACCGACCTGCGTGCCTTGCGCCTGGGTCGAACCTTGGCGTGGTTGATGCTCGTCAATTATCCCGACGCCAACAG TGAGCGAGTAACGGCGTTGCGCCCGTTGGTCGCGGACAAGCGCAAGCGCTATCAAGAACGTCTCAGCCAAGGCCATCACGCCGATCTGTTGCCTGAGCTT GAGGTAAGCCTGGCGGGTGCGTTGTTCTGGTTGGATGGTTTGCGCATGGTCTGGGAGTGCCTGGACGCCTTGCATGCAAACCTGGCCATGACTGAACTGG AGATGCATTTGGCTCTGCTGCTGCAGCGCCTGCCGCACCTGCCTGAATATCGGTTCAACGACGGCACCCCCTTTGCCGACCCTGCGACAGGTGAGTGGAT CGCGCTGCATGTGATGCGTCACGTGCACAAGCCCGAGCCCTCCCATGTTGTCGCCGACAGTGACACGCAGCCCTGGGAGACCACATTGCAAGCGGTGATG CCTTGCCTGCGAAAGGACGGCCTCAAGGCAGCAGTGGCCGTACTCAAGCAAGGGCTGCAGGCGGCGTGCGGTGATCGAGCGCGCTTTCATTGGCGCCTGG CGCTGGCCAGGTTGTGCGTGGCGGCTGGCAAGCATGAGCTGGCCAGGCTTCAGCTGGAAGAACTCGACCTTCAATTACAGCGCACAGGCCTGGAAAGTTG GGAGCCGGCGCTGACCTTGCAAGTCGGCAAGCTTCTGTATCGCTGCTATGAGCTGTTGCCACAAACCCAGCCCATATGCGACTGCAAAGACGCACTGCAT CGCAGGTTGTGCCATTTCGATCTTGAAGCAGTACTTGAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCTCATCAAAAAGGAAAAGCACCATGGCCAAAGACGGTTCGGTAGCCCCCAAGGAACGTATCAATATTACTTTCAAACCCGCTGTCGGTGGGGCCCAG GAAGAAGTCGAGCTGCCGTTGAAGCTGCTGGTGCTGGGAGATTTTTCCCAGCGTGCGGACCCACGCAAACTCGAGGATCGCAAGCCCATCGGTATCGACA AGCACACCTTTGACGAGGTGTTGGCCAAGCAAGCCTTGAGCCTGACGCTGAGCGTACCCAATCGCCTGCAGGATACCGCTGATGTGGAGGAGTTGCCGAT CCAGGTGCAGATCAACGTCATGAGGGACTTCAACCCCGCAAACCTGGTCGAGCAGATCCCGGCGTTGCAAAAGCTGATGGCATTGCGTGAAGCCCTGGTG GCGCTCAAGGGGCCGCTGGGGAACACGCCGAACTTTCGCAAGGCTATCGAGCAGGCATTGGCCAATGACGACTCCCGCGCTCGAGTCCTGGCCGAACTGG
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MAYSEELYVHYRKLARTACCSSSFVGSDVRFSSEFEALEAELGKAQSIHVAGQPDWQKVSEISEHLLRDHSKDLRVAVWLVWALYQRDSFAGLLAGLGLL RDLCELHWEQVYPGKLRTRAAAFGWLVSRLEQAFALNPSLSDQRPLFQALLEHLACLDQLWGEQLGSDAPLLLPIRRQLSERLAQGVSEPGGVATVIAQV KQTTQLLSPGQPINNEKDAHRLLRTLQEQARPLCAWWLRQDATDLRALRLGRTLAWLMLVNYPDANSERVTALRPLVADKRKRYQERLSQGHHADLLPEL EVSLAGALFWLDGLRMVWECLDALHANLAMTELEMHLALLLQRLPHLPEYRFNDGTPFADPATGEWIALHVMRHVHKPEPSHVVADSDTQPWETTLQAVM PCLRKDGLKAAVAVLKQGLQAACGDRARFHWRLALARLCVAAGKHELARLQLEELDLQLQRTGLESWEPALTLQVGKLLYRCYELLPQTQPICDCKDALH RRLCHFDLEAVLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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