Pseudomonas fluorescens AU6026, MZ22_RS17535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Scaffold_170, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGTATCTTGTATGAAAGCTACATCCACCCGCTGACCATCCTGTCTACGCTGCCGTCGGCCGGTGTCGGTGCGTTGTTGGCGATCTACCTGC TCGGGGGCGAGTTCAGCCTGATCTCGCTGCTGGGTTTGTTCCTGTTGATCGGCGTGGTGAAGAAGAACGCGATCCTGATGATCGACCTGGCGCTGCAATT GGAGCGCAACGATGGCATGAGCCCGCTGGAGTCGATCCGCAGCGCCTGTCTGTTGCGCCTGCGGCCGATTCTGATGACCACCCTGGCCGCGATCCTCGGT GCCTTGCCGTTGCTGCTCGGCAGTGGTGATGGTGCGGAGATGCGCCACCCGTTGGGCCTGACCATTATTGGCGGCCTGGTGTTCAGCCAGGCTCTGACCC TTTACACCACCCCGGTGGTTTACCTTTACCTGGACCGCGCGCGCCATCGCTTCAACGCCTGGCGCGGCGTGCGTACCGATGCTGCCCTGGACACTGCGCT
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| DNA Sequence for Gene |
>MZ22_RS17535
ATGACCGACCCAACCAACGCCCCTGCAACCCCTGTAGGAGCGAGCTTGCTCGCGAAGAACGCCCATGCGCCGCGCTCATCCAGAATGAACGCGTTATCGT TGACGGCTTTCGCGAGCAAGCTCGCTCCTACAGTGGGCCTGGCTATGTTGCTCAGCGCCTGCGCCATCGGCCCTGACTACAAACGCCCGGACGTCATCGA GCCGGTGCAGTTCAAGGAGGCCCAGGGCTGGCGCCAGGCCAACCCGAGCGACTCCCTGGCCCGCGGCGCCTGGTGGGAGCTGTACGGTGACCGACAACTC AATGACCTGGTGGTGCGCCTTAACACGTCCAACCAGACCGTCGCCCAGGCCGAGGCGCGTTTTCGCCAGGCACAGGCGCTGGTACGCAGCTCACGGGGGG CCTTTTACCCCAGCGTTGACCTGAGCGTCGGCAAGACCCGCGCCAGCCAGGGCACCGGCAGCAGCAGTGCCAGCCTCAGCAGTTCCAGCAGCGGTATCCG CGACACCCTCAACGCCCAGTTGGGCGTGAGTTGGGAAGCCGATATCTGGGGCAAGTTGCGCCGAGGCCTGGAGGCCAACGAAGCCAGCGCCGAGGCGAGC TCGGCCGACTTGGCCGCGATGCGCCTGAGCCAACAGTCCGAACTGGTGCAAAGCTACCTGCAACTGCGGGTCATGGACGAGCAGACGCGTTTGCTGCAAG CCACGCTGGACACCTACCAGCGCTCATTGAAAATGACCGAAAACCAATACCGTGCCGGTGTGGCTGGCAAGGATGCCATCGCCCAGGCGCAAACCCAGCT CAAGACCACTCAGGCCAGCCTGATCGATCTGATCTGGCAGCGTGCCCAATTGGAAAACGCCATCGCCGTACTGATCGGTGAGGCGCCAGCCAACTTCAAC TTGGCGGTGAGTAAAGACATCCCGGCCCTGCCGCAGATACCGGTGAGCCTGCCGTCCCAGTTGCTGGAGCGTCGCCCCGATATCGCCTCGGCCGAGCGCT CGGTCATCGCCGCCAACGCCAATATTGGCGTGGCCAAGGCTGCCTATTACCCCGACCTGACCTTGAGCTTGGCGGGGGGCTACTCCAGCAGCACCTATGA AGATTGGATCAGCCTGCCAAACCGCTTCTGGTCGGTAGGGCCGAAACTGGCGATGACCCTGTTCGATGGCGGCCAGCGCTCGGCGGAAGTCGACCGCACC GTGGCCAGCTATGACGAGACCGTGGCCAAATACCGCCAGACCGTACTGGACGGTTTCCGTGAGGTGGAAAACTACATGGTCCAGCTCAAGGTGCTCGCCG ATGAGGCGGTGGTCAGCAATGAAGCACTGGAAGCCGCGCGTGAATCCTTGCGCTTGACCGAAAACCAGTACAAGGCCGGGTTGATTGCCTATCTGGATGT GGTCACGGTGCAGGCGACGGCATTGAGCAACGAGCGCACGGTATTGACCTTGCTGCAGTCGCGGCTGGTGGCCAGTGTGCAGTTGATCGCAGCATTGGGC GGAGGCTGGGATGGCCAGACCTCCCTGGCCGAAAAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGATACGCCGCGCATCCTGTGGGTGCAAGATCAAATGTGTGGGCTTGCCCCAATGCCAGTCAGTCAAGCACAGCACCCTGGGGGGAGCTGGCTTGCCT GCGAAAGCGTTAGTGCAGTAGCAGATGCGGTGACTGACACACCGCCTTCGCGGGCAAGCCCGCTCCCACAGGAAATCTGCGCAAGCCCCGCACATTTTGA TGTCCATGATGTGGTTGAAAACAGCCAGATAAAGCCAGCCGATTGACGCCAGAAATTGCGTGATGGCCAATGGATTAATTAATCACCTGTCCTGTATTCA TACTCGCTACAATCGCCCGATTTGCCACCCGGCACGGGCTTTTGCGCCGGTCGCCTGCGAGACGTCCCATGCTGATCGGTAGCTATTCAACCTCCCTTGT CGTGATTTCCCTGTGCGTGGCCATCCTGGCGTCCTACACCGCCTTGGACCTGGCCGGGCGTATCGCGACCGCCAAGGGGCGTGCCGTTTACCTGTGGATC
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| Amino Acid Sequence |
>RND transporter
MTDPTNAPATPVGASLLAKNAHAPRSSRMNALSLTAFASKLAPTVGLAMLLSACAIGPDYKRPDVIEPVQFKEAQGWRQANPSDSLARGAWWELYGDRQL NDLVVRLNTSNQTVAQAEARFRQAQALVRSSRGAFYPSVDLSVGKTRASQGTGSSSASLSSSSSGIRDTLNAQLGVSWEADIWGKLRRGLEANEASAEAS SADLAAMRLSQQSELVQSYLQLRVMDEQTRLLQATLDTYQRSLKMTENQYRAGVAGKDAIAQAQTQLKTTQASLIDLIWQRAQLENAIAVLIGEAPANFN LAVSKDIPALPQIPVSLPSQLLERRPDIASAERSVIAANANIGVAKAAYYPDLTLSLAGGYSSSTYEDWISLPNRFWSVGPKLAMTLFDGGQRSAEVDRT VASYDETVAKYRQTVLDGFREVENYMVQLKVLADEAVVSNEALEAARESLRLTENQYKAGLIAYLDVVTVQATALSNERTVLTLLQSRLVASVQLIAALG GGWDGQTSLAEKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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