Pseudomonas fluorescens AU6026, MZ22_RS12295

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU6026 Contig_77, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAGCGCCACCAAATACCTTGAGCGCCTGGAAATCGCGCACAAGGTCAGCGTCAAGGACGGCGTGTTCAGCACCACTGACCTGTCCACCGGCCAACGCAAG CGCCTGGCCCTGGTCAATGCCTGGCTGGAAGAACGCCCGGTACTGGTGTTCGACGAGTGGGCCGCCGACCAGGACCCGGCCTTCCGCCGCATCTTCTACA CCGAGCTGCTGCCGGACCTCAAACGCCTGGGCAAGACCATCATCGTGATCAGCCACGATGATCGTTATTTCGACATCGCCGATCATCTGGTGCGCCTGCG TGCCGGTCAGGTGGTGCATGAGATGGAGCCTGCATGAAGTACCGGAATAATTTTTTCCGGTTTTGCGAAGTAGGAACGTCTCACTAGTGGTAATGAGAAC TAACCTCAATAAACACTTAGAATTGCCCACTTAAAACATAGAAGAGAAAGCATCCATGCCAGCACGACTCGGTCTCAGCCCCCTGAGCAAAGCGCTATCC
DNA Sequence for Gene
>MZ22_RS12295
ATGCGCCGGGCCCTGAACATCAACCTCTTGCCCAGTGCCTTGGCGTTGGCTGTGTCGATGCCGATTGCAGGCTATGTGCAGGCCCAGGAGATCGAGTTGA ATATTCCTGCGCAGTCGCTGGGGAGCGCACTGCAGGAATTTGGCCGCCAGACCAATGTGCAAGTGCTCTACAGCCCGGGCGATGTGCAGGGCAAGAACAG CCCCGCCGTCAAGGGCAAGATGCAGCCGCAGCAGGCCATAGCTGCATTGCTGGCCGGTAGCCAGACTACCTATAACCTCAACGGCAATACCTTGACCGTC ACTGCTGCTGGCAGCGGTGGTGGGCTCGAGCTGAGCCCGACGCAAGTGACCGCCAACTACTTGGGCAACGTCACCGAAGGTTCTGGTTCCTACACGCCTG GCACGATTGCCACGGCTACACGTTTGACGTTGACCCCACGGCAAACTCCGCAGTCGATCACCGTGGTGACTCGCCAGCACATCGAGGATTTTGGCCTCAA CAACATGGATGACGTGATGCGCCATACGCCGGGCATCACCGTTTCCGCCTACGACTCCGACCGCACCAACTACTATTCCCGTGGTTTTTCGGTCAATAGT TTCCAGTACGACGGTATTCCATCGACTGTGCGTAACGTCGGCTATTCGGCGGGCAACACCCTGAGCGACATGGCGATCTACGACCGTGTTGAAGTCCTCA AGGGCGCTACCGGCCTGCTCAACGGTGCCGGTTCCCTGGGTGCGACCATCAACTTGATCCGCAAGAAGCCAACCGCGGAATTCAAGGGCCATGTGCAATT GGGGGCGGGTTCCTGGGACAACTACCGCAGCGAAGTGGATGTCAGTGGCCCCTTGACCGACAGCGGCAATATCCGTGGCCGTGCGGTGGCTGCGTATCAG GACAAGAAGTCCTTTATGGACCACTACTCGCGCAAGACCGAAACCTACTACGGCATCACCGAGTTCGACCTGTCTCCCGATACCATGCTGACGGTGGGCT TCGATTACCAGGACAACATTCCACAGGGTTCCAGTTGGTCCGGCTCCTTCCCGCTGGTCAACTCCAATGGCAGCATCAACAAAATGCCGCGCTCCTACAA CAACGGCACCACCTGGAGCTCGTGGGAGCAAAACACGCGTACCGCCTTTGCCATGCTCGAGCATGACCTGGGCGACGGCTGGGTGACCAAATTCCAGCTC GACCACAAGATCAACGGCTACCACGCCGATCTGGGTTCGATCCAATTCGTCCAGCCGGCAGCCGATGGCACCGCTGAGATCAACGGGCAGAAATACACCG GCGAGACCAAGAGCACCTCGGCCGACCTCTACGCCACCGGCCCTTTCAGCCTGTTTGGCCGCGAGCATGAACTGGTGGTGGGCGGCTCGATCGGCACCTC ACGCTGGCAAGGCAAGGGGTACTGGTCGCCGGAATGGCCTGGCGGTAACAAGGTCGATTTCTATAACTGGAACGGCCATATCGCCAAGCCTATCTACGGT CCTGCCCAACAGCACATCGACGACACTATCCGTCAAACCGGGTATTACCTGACCGCGCGTTTCAACGTGATTGACGACCTGAACGTGATCCTGGGTGGGC GCGTGGCCAACTATCACGTGACTGGCAACAACCCTTCCTACAAGGAAACCGGGCGGTTCATTCCTTACGCCGGTGTGATCTACGACCTCAATGACAACTT CTCGGTATACGCCAGCTACACCGATATCTTCCAACCTCAGGAAAGCACCTATAAGGACCGTAACGAGAAGCTGCTGGAGCCAGACGAAGGGCAGAACTAC GAGTTGGGCCTGAAAGGCGAGTTTTTCGATGGCCGCCTCAACACCAGCATCGCTTACTTCGAAGTGCATGAGACTAATCGCCCCATCTCGGATGACGCCT ACAACAACCAGACACCTGCCCCGAACAACTGGGCGTTCAAGAGCTCCAAGGCCGTCACCAAAGGCTACGAAGCGGAAATTTCCGGTGAGTTGAGCCCAGG CTGGCAACTTCAAGGTGGCTACACCCACAAGATCGTACGAGACGAAGACGACAAGAAACTCTCCACCTTCGAACCCGAGCATCAGGTCAACCTGAACACC ACCTACAAACTCAAGGGCGACCTGGACAAGTTCACCATCGGTGGCGGTGTACGCTGGCAGACCAAAGGTTGGAACGAGATCTGGAACGGGCCACTTGAGA AAAACCAGGACATCACCCAGGAGTCCTACTGGTTGGTGGATTTGATGACCCGCTACCAGGTCACCAAGAACCTGTCGGCTACCGTCAACTTCAACAACAT CTTCGACAAGTCTTACTACACCAACGTGGGCTTCTATAACTCGGCCGCCTACGGTGAGCCACGTAATGTGATGGTCAGCACGCGCTGGGACTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCCACGCGTCGATCGATCAAACGCCCGGTGAGCACCCCATGCTCACCGGGCTTTTTTTTGGGCGTGCAGAGATACTGGCGAAGAGGGATTGGAGCATAA AAAAACCCGGACACTGGATCCGGGTTTTTGTGATTGAGCGGCGGCTTACCTCAACGCCTCTACCAAACTGCTGATAAACACCGCGCTGTCGATAATGCCA TCATGATCGGTCTCAATCATCACTGAGCGCTCGATGCGCCCTTGGCTGATCACCGTTGCCATTTGCTGCTCGATCAGGTCCTTGAAGCGCCCTGCCCGGC TCATGGACGCCCACCAACAAGTGACGGGCGCCTTGATCGGCTTGAAGTCAGCTTGCAGCAAACGCTCACTGAGTGCCCGGTCAACGTCCCAGGAAATCTG CGCCTCATTGCCACGCAGTAATTCATCCTTGATCACCGTGAAGGCTTCGCCCAAAGACTGTTCAGCCCAATTCACAAATTCCCGCCATTGTCCCGTTTCA
Amino Acid Sequence
>ligand-gated channel
MRRALNINLLPSALALAVSMPIAGYVQAQEIELNIPAQSLGSALQEFGRQTNVQVLYSPGDVQGKNSPAVKGKMQPQQAIAALLAGSQTTYNLNGNTLTV TAAGSGGGLELSPTQVTANYLGNVTEGSGSYTPGTIATATRLTLTPRQTPQSITVVTRQHIEDFGLNNMDDVMRHTPGITVSAYDSDRTNYYSRGFSVNS FQYDGIPSTVRNVGYSAGNTLSDMAIYDRVEVLKGATGLLNGAGSLGATINLIRKKPTAEFKGHVQLGAGSWDNYRSEVDVSGPLTDSGNIRGRAVAAYQ DKKSFMDHYSRKTETYYGITEFDLSPDTMLTVGFDYQDNIPQGSSWSGSFPLVNSNGSINKMPRSYNNGTTWSSWEQNTRTAFAMLEHDLGDGWVTKFQL DHKINGYHADLGSIQFVQPAADGTAEINGQKYTGETKSTSADLYATGPFSLFGREHELVVGGSIGTSRWQGKGYWSPEWPGGNKVDFYNWNGHIAKPIYG PAQQHIDDTIRQTGYYLTARFNVIDDLNVILGGRVANYHVTGNNPSYKETGRFIPYAGVIYDLNDNFSVYASYTDIFQPQESTYKDRNEKLLEPDEGQNY ELGLKGEFFDGRLNTSIAYFEVHETNRPISDDAYNNQTPAPNNWAFKSSKAVTKGYEAEISGELSPGWQLQGGYTHKIVRDEDDKKLSTFEPEHQVNLNT TYKLKGDLDKFTIGGGVRWQTKGWNEIWNGPLEKNQDITQESYWLVDLMTRYQVTKNLSATVNFNNIFDKSYYTNVGFYNSAAYGEPRNVMVSTRWDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site