Pseudomonas fluorescens AU6026, MZ22_RS12265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Contig_77, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAACCATCGGTGGGCTTGTGCGGGGCGTTGGCGCCGTTCCAGATTTCCGGCCAGCCGAAGATCGTCAGCGCGGCGCCCGACAATCGGCCGCGGGCGGC CTTGGCCAGGTCGAACTGGCCGCTGCCATCCTTGTCGGCCTCGTTGCCCGCCGTGCCGAAATCCAGGGGCAGGGTGATGTGGCTGTCGAACGACAACAGG CGATCCTGCATTTCATTGGCCTGCTTGATCACCTCCAGCGGGTAGCCGGCGTTGCCCTTGAACCACTGATCCCAGACCAGGAAACCGGCCCCGGCGCCGA TAGCCAGGGCCAGCGGCAGGCCGATATACAGCGCCTTTTTCGAACGTGATTTTGTCATTGCCATCTCAGTCAGTTGAGGCCTTTGCTATCAGGGAAGAAC GAGCGATGACGGGGGAAATTTAGGTGGCGGGGGGAGGGCGGTAAATTTCATCGGGTTGCAAACGTTCTAGCTCTGATCAAGCTGTTTCCTAAGGTAACCA
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| DNA Sequence for Gene |
>MZ22_RS12265
ATGACAATCTCTCGACGTGGGTTCATCGCAGGCCTGGCGCTGACCGGTGCAGCCGTGCCCGCGGCCTTTTATGCCCATCGCGAGTTGACGCGGGAAGAAG AGTTTCCTATCACCCCCGGCGAAGCTACGGTCGACCTCGCTGACACTCAGGGCCAGCACCTGGCGAACACCCTGCGGGGCGTCTGGAGCCTGCGCCTGGA AGGCCGCGACGCGGGCCTTGCGGGCCTGCCGCTGCATGGCCTGGAGTTGCTGCTGGACATTGCTCCCCGTGGGCGTGGCCTGCGCGGTTACCTGGACACC GCCGAGCAGCTGCGCGCTGAAGGCGAGCCGCGCTATCGGGTCTTGGGTGATGTGCTGACGGGCGAGGGCGCCGTGCTCTATTGGCGCTTGATCGACCGCG ATTCAGCCGGCGGCGTGCCGGCCTATGAATTCAAGATGACCCTGGATGAAGTCTGGGCCGATTTCGGCAATGCCGGCAGCGCCACCCTCAGCGGGCACAT CCTCGACCTTGAGCGGCCCCTGGCGCTGACCGAACGCGACAACCGTTTTATCGCCCACAAACAACTGTTCCCCGAAGCCCGCCAGCGCATCGGCCTCAAC CCGACCTTGCTGGCCTGGCTGATTTCTCCCGAGCACCGCCTGTTTCACCAACTGTGGCACGCCACCCGCGACCAATGGCACAAGCTCTCCGAAGAAAAAC GCGAGGCCCTGCGCGGCATCGGTTGGCAACCGGGGCCCCGTGGACAGGAACGCGACGCCCGCGGCAAGCGCAAGGACCGCAATGGTTCGGGCATCGACTT CTTCTTCATGCACCGCCACATGCTCGGCACCGCACGTTCCATGCAGGACTTGCCCTCCTGGCCGCAATTCCCCGAGCCGCAACCGCCGTTGGAGCGGGAT CGCCCGGGCTTTGTGCGCTACTTCGACAACCACGACGGTTTCGCACTGCCGCCCTGTTGGTCAGCGCCAGATGACGCCGACTACACCCAGTGGGTCAGCG ATATCAAGGCGGCCGAGACCTACCACAGCAACTTCCAGGTGTGGGAATCCCAATACCGCGACCCGCGCTACCTGGCCAAGTTGACCCTGGGCCAACTGGG CTCGGAAATGGAGCTGGGCCTGCACGATTGGCTGCATATGCGCTGGGCCTCGGTGCCCCGCGACCCGTCCAACGGCGCCCCGGTCCCCTTCGCCCGTGAC CCCGCAGACTTTGCCGCACGTTGGTATGCGCCGGAGAACGACTTTCTGGGCGACCCGTTTTCATCCCATGTGAACCCGGTGTTCTGGCATTTCCACGGCT GGATCGATGACCGCATCGAAGACTGGTTTCGTGCCCACGAGCGCTTCAACCCAGGCGAGGTGAGCCGACTGGAAGTCAACGGCGTAGCCTGGTTTGCGCC AGGCCGCTGGGTGGAAATAGGTGACCCGTGGCTGGGCCCGGACACCCACGGCTGCAGCACCACGCCGGGGCTGCAACAGGGGCGCTCGATGGAAATGGAC CCGGAGATCATGAAGCTGGCCCTGCGCATTACCTTCGGTGCCGATGAAGCGCTGCTCAAGGGGCTGTTCAAACGTGTGCCGCAGCGGCCATGGTATGCGC GGCATCTGAAACTCAAACGCGAGGCTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGTTTTTTTAAACCTGCTCTTCCTCGCGCAATTGCGCACTCATCTCATCGCAACTGCGTGCCCAGTCGCTCAACCATTGCGGCATCGGCGGTGAGGTG TCGTCCAAGCCCAACTCGCGGATGAATTCGGCCGGGGGCAGGGTGCCTTTGGCGGATCGAAACAGCCCACGCATCACCACCACGCCGACCACCCGCCCAT TGCTGACGAAGCGGTGCTCCATCAGGTTCCACTTGTGGTCCCAGCCGAGAATGCGGGTATGCACCTCGAATACCTCGAACAGCGTCAATTCCCGACGGAA CTTGCCCCAGGTATCGCCGACTATCGGCATCGCCTTATGGCGCAGCGCCACGCGAAAGGCGCCGGTGCGCAGCACAAAATCCATGCGAGCCACATCGGCC AGGGTGAAATACCGGCCATTGGTGACATGCCGGTTCAGGTCCAGGTCCAGCGGCCAGACACGCATGCGCACCACCGTGGTAGCCAGGCCGTGAACCGGTT
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGLALTGAAVPAAFYAHRELTREEEFPITPGEATVDLADTQGQHLANTLRGVWSLRLEGRDAGLAGLPLHGLELLLDIAPRGRGLRGYLDT AEQLRAEGEPRYRVLGDVLTGEGAVLYWRLIDRDSAGGVPAYEFKMTLDEVWADFGNAGSATLSGHILDLERPLALTERDNRFIAHKQLFPEARQRIGLN PTLLAWLISPEHRLFHQLWHATRDQWHKLSEEKREALRGIGWQPGPRGQERDARGKRKDRNGSGIDFFFMHRHMLGTARSMQDLPSWPQFPEPQPPLERD RPGFVRYFDNHDGFALPPCWSAPDDADYTQWVSDIKAAETYHSNFQVWESQYRDPRYLAKLTLGQLGSEMELGLHDWLHMRWASVPRDPSNGAPVPFARD PADFAARWYAPENDFLGDPFSSHVNPVFWHFHGWIDDRIEDWFRAHERFNPGEVSRLEVNGVAWFAPGRWVEIGDPWLGPDTHGCSTTPGLQQGRSMEMD PEIMKLALRITFGADEALLKGLFKRVPQRPWYARHLKLKREA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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