Pseudomonas fluorescens AU6026, MZ22_RS06620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Contig_74, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCGAGATAATTCATGCCGCGCAGTCTACCACTGCCACCCACATATCGTTATAACCCGATATACCGATTCGCTTTGGTCTCATATCAAAATCATATTGG TATATCGGGATATTGCGATTTAAAGTTCGCCTCATCGCGATATAACGCTTTACGACACCGAGCACCCTGCCATGTCCATCGACCTCGACGAAATAATAAA AGCCCTGGCGCACCCAGTACGACGAGACATCCTCACCTGGCTCAAAGACCCGAAAGTGCAGTTCCCCGAGCAATTGCACAACCACGAATACGGCATCTGC GCCGGGCAGATCGACCAGCGCTGCGGCTTGTCCCAGTCGACCGTGTCGGCGCACCTGGCCACCTTGCAACGGGCGGGGTTGATCACCAGCCAGAAGGCCG GGCAGTGGCACTTTTTCAAGCGCAACGAGGAAGTGATCCAAGCCTTTCTCGCTGCGCTCATTACCGAACTCAGCGCACCGTAATCATCAAGGACACGCCC
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| DNA Sequence for Gene |
>MZ22_RS06620
ATGCCCCTCTCGCTACTCATACTGGCCCTGAGCGCCTTCGCCATCGGCACCACCGAGTTCGTCATCATGGGCTTGCTGCCCGATGTGGCGACGGACCTGG GTGTGTCGATTCCCGGCGCCGGCTGGCTGGTCACCGGCTACGCCCTGGGCGTGGCCATCGGCGCGCCGTTCATGGCACTGGCCACCGCCAGGCTGCCACG CAAGGCGGCGCTGGTAGCGCTGATGGGTATTTTCATTATCGGCAATCTGCTCTGTGCCCTGGCAAGCGACTACAACGTGCTGATGTTTGCCCGTGTGGTC ACAGCGTTGTGCCACGGTGCGTTCTTCGGCATTGGCTCGGTGGTGGCGGCCAACCTGGTGCCGGCCAACAAACGTGCGTCGGCCGTCGCGTTGATGTTCA CTGGGTTGACCCTGGCGAACGTGCTGGGCGTGCCCCTGGGTACGGCGCTGGGCCAGGAAGCCGGCTGGCGCTCGACCTTCTGGGCCGTGACCGTGATTGG CGTAATCGCCTTGATCGGCCTTATTCGCTTCCTGCCCGCCAAGCGTGACGAAGAAAAACTCGACATGCGCGCCGAACTGGCCGCCCTCAAGGGTGCCGGT ATCTGGCTGTCGCTGAGCATGACCGCGCTGTTTGCCGCGTCTATGTTTACCCTCTTTACCTACGTCGCACCGCTGCTCGGCGATGTCACCGGCGTGTCGC CCAAGGGCGTGACCTGGACCCTGCTGCTGATCGGCCTGGGGCTCACCGTGGGCAACATCATCGGCGGCAAACTGGCGGACAAGCGCCTGGCGGCCACCTT GATCGGCGTGTTCATCAGCATGGCGGTGGTTTCCACGGTGTTGAGCTGGACCAGCGTTGCGGTGATACCGACTGAAATCACCCTGTTCCTGTGGGCCACC GCCTCGTTCGCCGCCGTGCCGGCGCTGCAAATCAACGTGGTGACCTTCGGCAAGGCCGCGCCGAACCTAGTATCCACCCTGAATATCGGTGCCTTCAACA TCGGCAACGCCCTCGGCGCCTGGGTCGGCGGCAGCGTGATTGCCCACGGTTTCGGCCTGACCAGCGTGCCCCTGGCCGCTGCAGCACTGGCGATTCTCGC GCTGCTGGTGACCCTTATCACTTTCCGTCAGGGCGGCAACGCCGACCTGGCCCCCGCGACCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAACTTGAAAGAGAAGGTGTTTTTTCCATGACGACTATTTTCGATCCGATCACACTGGGCGACGTGCAACTGTCGAACCGCATCATCATGGCGCCGCTG ACCCGCTGCCGCGCAGACGCCGGGCGCGTGCCCAACGCGCTGATGGCCGAGTACTACGTGCAACGCGCGTCCGCGGGGCTGATCCTCAGCGAAGCCACTT CCGTGGCACCGATGGGCGTGGGCTACCCGGACACCCCCGGCATCTGGTCCAACGATCAGGTGCGCGGCTGGGCCAACATCACCAAGGCCGTGCATGGCGC GGGCGGCAAGATCTTCCTGCAGTTGTGGCACGTTGGCCGCATCTCCCACGAGTCCTACCTGAACGGCGAAACCCCGGTGGCTCCGAGTGCGGTCCAGGCT AAAGGCCACGTCAGCCTGGTTCGCCCATTGGCCGACTACCCAACCCCGCGCGCCCTGGAAACCGCTGAAATCGCCGACATCGTCGACGCTTATCGCACCG
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| Amino Acid Sequence |
>arabinose transporter permease
MPLSLLILALSAFAIGTTEFVIMGLLPDVATDLGVSIPGAGWLVTGYALGVAIGAPFMALATARLPRKAALVALMGIFIIGNLLCALASDYNVLMFARVV TALCHGAFFGIGSVVAANLVPANKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVIALIGLIRFLPAKRDEEKLDMRAELAALKGAG IWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWTLLLIGLGLTVGNIIGGKLADKRLAATLIGVFISMAVVSTVLSWTSVAVIPTEITLFLWAT ASFAAVPALQINVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAHGFGLTSVPLAAAALAILALLVTLITFRQGGNADLAPATN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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