Pseudomonas fluorescens AU6026, MZ22_RS21965 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6026 Contig_33, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCTACCGTGAATTGGCGCGTGGGGTGCATCCGGACCGCTTCGCTGACGCTTCCGAGCGTGAGCAGCGCTTGGCCCTTGAGCAATCGGCCAGCCTCAA CGAAGCCTATCAGACGCTCAAAAGCCCCGCGAAACGCGCACGTTACCTGCTCGCCCTGAACGGTGGCGAGTTGCCGTTGGAAGTTACGGTGCACGATCCG GACTTCCTCATGCAGCAGATGCAGTGGCGCGAAGAGCTCGAAGACTTGCAGGACGAAGCCGATATAGCCGGTGTTGCGGTCTTCAAGCGTCGTCTGAAAA CCGCCCAGGATGAGCTCAACGAAAGCTTCGCAGCCTGTTGGGATGATGCGGCGCAACGCGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTTCTCGA CAAGCTCACCTACGAAGTGCGCCAGCTAGAAGAGCGCCTCGACGATTAACCCAGTGCTGCCCGTGATGCACGCCTGATAGACAGATAAGACCTGATTACC
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| DNA Sequence for Gene |
>MZ22_RS21965
|hscA
ATGGCTCTACTGCAAATCGCCGAACCCGGCCAAAGCCCTCAACCGCACCAGCGTCGCCTGGCGGTCGGGATTGACCTGGGCACCACCAATTCCCTGGTTG CTGCCTTGCGCAGCGGCCTGTCCGAACCGCTGCCCGACGCCGATGGGCAGGTGATCCTGCCGTCTGCCGTGCGTTATCACGCCGACCGCACTGAAGTGGG CGAATCGGCCAAGCTCGCCGCGTCCGCAGACCCCTTGAACACGGTGTTGTCGGTCAAGCGCTTGATGGGTCGTGGGTTGTCCGACGTCAAGCAATTGGGT GACCAATTGCCGTACCGCTTTGTCGGCGGCGAGTCCCATATGCCGTTCATCGACACTGTCCAGGGGCCCAAGAGCCCGGTGGAAGTGTCGGCCGATATCC TCAAGGTGCTGCGCCAGCGTGCGGAAAACACCTTGGGTGGTGAGCTGGTAGGGGCGGTTATCACCGTTCCGGCGTATTTCGATGACGCCCAGCGTCAAGC CACCAAGGACGCGGCGAAACTTGCCGGCCTGAACGTGCTGCGCTTGCTCAACGAGCCGACTGCGGCGGCTGTGGCCTACGGCCTCGATCAGCACGCTGAA GGCCTGGTCGCTATTTATGATCTGGGCGGCGGTACCTTCGATATTTCGATCCTGCGCCTGACCGGCGGTGTGTTTGAAGTGCTCGCGACCGGCGGCGACA GCGCTCTGGGCGGCGATGATTTCGATCACGCCATCGCTGGCTGGATCATCAGCAGTGCCGGCTTGTCGGCCGACCTGGACCCAGGCGCGCAGCGCAACCT GCTGCAAACTGCCTGTGCGGCCAAAGAGGCGCTGACTGACGCTGCTTCTGTTGATGTTTGCTACGGTAACTGGTCGGCGCCACTGACTCGCGAAGCCTTT GATACGCTGATCGAGCCGATGGTTGCCCGCAGCCTCAAAGCCTGCCGTCGTGCTGTGCGTGATTCCGGTATCGAGTTGGAGGACGTTGGCGCAGTGGTCA TGGTAGGCGGTTCCACCCGCGTGCCGCGCGTGCGTGAAGCGGTAGCCGAAGCCTTTGGGCGCCAACCACTGACCGAAATCGACCCGGATCAAGTCGTCGC CATCGGCGCTGCCATCCAGGCCGATACCCTGGCTGGTAACAAACGTGATGGCGGCGAATTGCTTTTGCTCGACGTGATCCCGTTGTCCCTGGGCCTGGAA ACCATGGGCGGCCTGATGGAGAAGGTGATCCCGCGCAACACCACCATCCCCGTCGCACGTGCCCAAGATTTCACCACCTACAAAGACGGCCAGACAGCCA TGATGATTCATGTGCTGCAAGGCGAGCGCGAGCTGATCAGCGACTGCCGTTCCCTGGCGCGTTTTGAGTTGCGTGGCATTCCGGCGATGGTGGCGGGCGC GGCGAAAATTCGCGTGACCTTCCAGGTCGATGCCGATGGCCTGCTCAGTGTCGCTGCGCGCGAACTGGCGTCTGGCGTTGAAGCCAGCATCCAGGTCAAG CCGTCCTACGGCCTCACCGATGGCGAAATCGCCAAGATGCTCAAGGATTCGTTCCAGTATGCCGGTGACGACAAGGTCGCCCGCGTATTGCGCGAGCAGC AAGTGGATGCCCAGCGCCTGCTCGAAGCGGTGCAGGGCGCCCTTGAAGCCGACGGCGAGCGCTTGCTGGATGCCGAAGAGCGCATGGTCATTGACCTGCA AATGCAGGAACTGGCCGAACTGATGAAAGGCAACGATGGTTACGCCATCGAGCAACAGACCAAGCGCCTGTCGCAAGTGACTGATGCCTTTGCCGCCCGC CGTATGGATCAGACGGTTAAAGCCGCGCTGGCGGGCCGCAACCTGAATGAAATTGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATGCCGCAGGTCACTTTTCTACCGCACGCCGAACATTGCCCTGACGGCATGGTCGTGGAGGCTGAGACCGGCAAGTCCCTGCTCGACGTCGCCCATG ACAACCACATCGAGATCGAAAGTGCTTGTGGCGGCGTGAATGCCTGCACCACCTGTCACTGCATCATTCGTAAAGGTTTCGACAGCCTCAATGAGGCTGA CGACCTGGAAGAAGACTATCTTGATCGGGCGTGGGGCCTGGAGCCGACGTCGCGCCTGAGTTGTCAGGCGAAAGTGGGGACTGAAGACCTCACCGTCGAA ATCCCGAAATATTCGCTCAACCATGCAGCCGAAGCGCCGCATTGATTCAAGGAAATGTCATGAGCCTGAAATGGGTTGATGTACAAGAAATCGCTATACA ACTTGCTGAAGCTCATCCTGAGGTCAATCCTCTTACGGTGAACTTCGTCAAGCTGCGCGACCTCGTAATGGCACTGCCGGATTTTGACGACATCCCTGAC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLPDADGQVILPSAVRYHADRTEVGESAKLAASADPLNTVLSVKRLMGRGLSDVKQLG DQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILKVLRQRAENTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GLVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIAGWIISSAGLSADLDPGAQRNLLQTACAAKEALTDAASVDVCYGNWSAPLTREAF DTLIEPMVARSLKACRRAVRDSGIELEDVGAVVMVGGSTRVPRVREAVAEAFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMIHVLQGERELISDCRSLARFELRGIPAMVAGAAKIRVTFQVDADGLLSVAARELASGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLLEAVQGALEADGERLLDAEERMVIDLQMQELAELMKGNDGYAIEQQTKRLSQVTDAFAAR RMDQTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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