Pseudomonas fluorescens AU6308, MZ32_RS06990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6308 Scaffold_190, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTTCGAAGGTGTAACGCAGGTCACTTTGACGGGGCATGAGGGCATCCTTGTAATACGCCTGAGACAAGACGTAATCCTAGGAAGCTGTGATCTAGCAC TTCAATGGTGCGGAGGAAATCGAGAGGTCTCTTACCCACGCAGCTACAAAGAGCTGTCAGACCTTTCTGTACTACTCAGAGTAAAGCCGTACAACTGTAG GCAAATCAATCGATAGCTTGAAGGTCCACGCCAGAGGTCAACTGTTGCGGTTTGGGCAATAGTTATTATCTTGTTACACTCTGTATCGCACCGCTCGCCT GCGTTACTTTGACGCATCGATGAGCGCGACGGCAAAGGCAGCTGACCACTCACCCGAATTTCCCTCGACTTATTTCCAGGGCTCTACACTGGGAATCTGT CTTAAAGCCGCTGACTTCAGCGGCTTTTTTTTGCCGTGAAAAAAGGCCGGGCACACCCCACGACACTGGCCGTTCATGATTGACCAAAGGAGCTCCACCG
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| DNA Sequence for Gene |
>MZ32_RS06990
GTGAAGAACTCGCTGACGTTCACCCCGTTATTCCTCGCAATCGCAGCAACGATCATCCCGCTTGCCCACGCGGCAGACGCCCCGCCCGTTGAAGGTTTCG TCGAGGGTTCACACCTCACGATCAACACCCGCAACTACTACATGAACCGCGACCGACGCGATATTCATACCGATGACAGCAAGGAATGGGGCCAGGGCTT TATCGGCACCTTCGAATCCGGCTACACCCAGGGCACCGTCGGCTTCGGCCTGGACGTCAATGCCATGCTCGGCCTCAAGCTCGACGGCGGTGGTGGTACG GATGGTTCCAGCATCCTTCCGTATGGCAGCGGCAACGGCAAAGCGCCGGGTTCGTTCTCGACGGCTGGCGGCACCTTGAAGCTGCGCGCCTTCGACACCG AACTGAAAGCCGGCGACCTGTTCCTCAACAACCCGGTGATCGCCGGCGGCATGACGCGCATGTTGCCGCAGACTTTCCGTGGCGTGAGCCTGACCAACCA CAGCTTTGACGGCTGGATGATCGAAGGTGGCCAGGCCAGTTTCACCAAGCTCTACAACCAGAGCGGCCATCGGCGCATCGGCACCAGCTACGGCACGCTG CCCGCCAACACCGACAGCCAGCACCTGGACTGGGCTGGCGTGTCGTTCAGCGGGATCGAGGGGCTGACCAGCAACCTGTACGCCTCCGAACTCAAGGACG TCTGGCACCAGTATTACTACGACGTGGAATACACCTATGCCCTGAACAACCTGGTCAGCCTGACGCCCGGCCTGCACTACTACCATACCCAGGACACCGG CCAATCGCTGCTGGGGGATATCGACAACAACACCTACAGCCTGCATTTCACCGTGGGCGTGGGCAACCACAGCGTCACGGCGACTTATCAGCGGGTCAAT GGCAACACGCCGTTCGACTACATCACCCAGGGCGACAGCGTGTACCTGGACAACTCCCAGCAGTACTCGGATTTCAACGGGCCCAACGAGCGCTCCTGGA AGCTCAAGTACGCCTACGACTTCGCCGGCCTCGGCGTGCCCGGCCTGACGTCCGCCGTGTCCTACATCAGCGGCAAGACCGACCTGACCAAGGTCGACCC CAACAGTCGTGGCTACAGCAACTGGTACAGCGCCGATGGCAAGGACGCCAAGCACTGGGAGCGCGATATCGACCTGAAATATGTGGTGCAGGGCGGCAAG GCCAAGGACTTGGCCGTGCGCCTGCAATGGGCGACCAATCGCGGCAGCAATGGCTACTCTGCAGTGGACCGCGATGTGGATGAATATCGTGTGATCGTGG ATTACCCGATCAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTACAGGTAGGAGCGAGCTTGCTCGCTCCTACAGGTTGGCTTTGCGCCATATTTAAGAGTTGCTACTACGCTAAGGGCATTCTCAATGCAGAAGTGTGCC CGATGAGTTCAAGCCCTACCCGCCCCAACCGCCGCCCGGAGCGCCTGCTGATCCTGGGCAGCACGCTCACGGTGTTGCTGATCGTGGGGGTCGTCACTGC GCTGCTGATTCGTGAACATGCCAACACCCTGCAGACGGCCAAGCGCACCGCCAACACCATCACTCAATTGATCGACGCTGATGTGCTGCGCAATGTCGAA CTTTACGACATGGCCCTCAAAGGCTTGATCAGCGCCACCGAGCGCACCGACCTGCAAGACGTTTCAGATAGCATCCGTCATTTGGTGCTGTTCGATCGTT CCGCAGCGGCGCCCTACAAGGGCGATATCCTGCTGTTGGACCCGGCTGGCGAGGTGATTGCCGATTCCTCCCTGCTCACGCCCAAGCTGGGTAACTTTGC
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| Amino Acid Sequence |
>porin
MKNSLTFTPLFLAIAATIIPLAHAADAPPVEGFVEGSHLTINTRNYYMNRDRRDIHTDDSKEWGQGFIGTFESGYTQGTVGFGLDVNAMLGLKLDGGGGT DGSSILPYGSGNGKAPGSFSTAGGTLKLRAFDTELKAGDLFLNNPVIAGGMTRMLPQTFRGVSLTNHSFDGWMIEGGQASFTKLYNQSGHRRIGTSYGTL PANTDSQHLDWAGVSFSGIEGLTSNLYASELKDVWHQYYYDVEYTYALNNLVSLTPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVGVGNHSVTATYQRVN GNTPFDYITQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFAGLGVPGLTSAVSYISGKTDLTKVDPNSRGYSNWYSADGKDAKHWERDIDLKYVVQGGK AKDLAVRLQWATNRGSNGYSAVDRDVDEYRVIVDYPINVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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