Pseudomonas fluorescens AU6308, MZ32_RS04825
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6308 Scaffold_190, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAACTTTCCAGCCACAGCTTCCCCGGCAACATACGCGAGCTCAAATGCCTGGTGGAGCGCGCCGTGCTGTTGTGTGACGACAGCGTGATCCGACCGGA GCATCTGGCGCTGCCAATGACACTGACGCCAGCCGCTACCGATGAAGCGACCCTGCGCCAGCGCATGGAGCGAGTGGAGCGCACGTTTTTGCTCGATTGC CTGCACAAGAATCGCGGTAATCGCACCCGTACGGCACGGGAGCTAGGGGTTGCCCGGCGTACGCTGCTCTATCGTCTTGCCCGCTTGAACATTCCCTTTG GCGATGCCAGGGAAGAACGCTGAATGACGCACCTTATTTTCACTATGGGAGAAAGCCGATGCCTGATCGTCCATGGCACATCGTCGTGCTTGTACTGTTT TTGCTGGGTGGCTGTAACGCCAACTATGTATTCGATGACGCTGAGTACCATCCTGTGGGTGACCCACAGGCGATCACTCGTGGCCGCTGAATGGAGGGTC
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| DNA Sequence for Gene |
>MZ32_RS04825
ATGAAGATGCAGCTTGTGTTTGAGATCTGCGCGCCCGAGAGCGAAAAGAACGTGCCCCTGGACCGCAAAGTGTTTGACGTGAGTGGTGGCGTGATCGGCC GCGGCTCGGAATGTGATTGGGTAATACCTGACGCCAGCCGCGTGCTCTCCAGCCACCATGGACTGGTCGCCTACCGCGAGGGCCGCTATTTCCTCACGGA TATCAGCCGCAACGGAATCAGGGTGGCAGGGAGTCATGAGCGCCTGCGCAAGGGGCACGCGCGATTGATCAGTGATGGCGAAGTGTTCGAGCTGGGAGCG TTGGCGATACGTGCGCGCTTGCTGGAGCCACCGCAACCTGCTGGCGGCTTGCAGGCCGCCTCGGCAGTAACGATCCCTGAAGACGCCTTCCTCTCGCTGG GCCCTTCGCATCAGTTGGACCTTGATTGCCGTATGCATGCCTTTTCGCAGGATCTGGAGGCATTGAACGAGTCCGCCGATGAGCAGCAAGTGTGGACGGA TCGCTACGGGGCTGACCGGGAGCACGTGGTCTTCCCTCGTCGGGAAGAACCCGCGGTAGAGGTTGCTACGGTACAGGCAGCGATGACTGTGCCGACTGAT GAAGAGTTCTGGCCACAATTTGCAGCAGCCTTGGGCCTGGACCTGAATACGCTCGATCAACCGGGTCGGCAAGCACTGGCGATCAAGGTGGCGCGCTTAT TTCGCCTGACGATCGAAGGGTTGCAACAAAGTTTGCGCACCCGTGACGAATTGAATAACGAGTTGGATACAGCGCCGTTCGGCAGCCATGGTGTGGGCCT TAATCCCTTGAAAGCGTGTAGCGACATCGATGCTGCGGTAGCTGCGATGTTGGATATAAGTGCGTTAGGCCAGATGCCCGCTGTACGGGCTATCACCCAG GCTCACCGGGAACTGCAAGCGCATCAGGTCGCACTGTTGGCCGCCTGTCGAAGCACCTTGCGCAACGCCCGTGCGGCCTTTGAGCCCAGCTATCTGTTGG GATGCTTCGAGTCCTCGGGCAAGTCGGTCGGGTTTTTCTCGGATGGTGGGCATTGGCGTGCGTACCAGCGTCATTACCAGCGTCTGGTGGCGCAAGAGCG ATTGAATGATCGTCCTTTGGGGGGCGACTTCGCCAAGGCCTATGAGGAGCAGGTGCGCCTGATCTCCAGCCTGCATATTGATTTTCCAGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTCATGTACCGAGTCACCCTTGCTTTGCTGTTGCTCATGTTCGGGCTATTGACAGGTTGCAGCGCCGCCTCGCCTTTTTCTAAGCTGACCAAGCTAGA CATGGCGCTGACCGCCAGTGAACTCGTCAACCCGGATCTGCATGGCCGCCCCTCGCCAGTTGTGGTGCAGTTGATTGAACTGCGCCAGGGCGTCGCTTTT GAACATGCCGACTTCTTCGGTCTGTATGGCAATGCGCAGCAGACGCTGTCCAAGGACTGGGTAAACAGCGACGAACTTGAATTGCGCCCTGGGGACCGCC TGGGGCTCAAGCTTCGTATCGGACCTGACAGTCGTTTCGTGGGGGTGCTGGCGGCTTATCGAGACCTGCCCAATGTCCAGTGGCGGCTGCTGATCCCGCT GACCGTGCAACAACGTAACCGTGCTGATCTGGTATTGGATCAGACCGGTATACGCGTTGCTGGCTCACTCGCCGGCCTGGAGGCGCAGTGACATGCAGGC
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| Amino Acid Sequence |
>type VI secretion protein
MKMQLVFEICAPESEKNVPLDRKVFDVSGGVIGRGSECDWVIPDASRVLSSHHGLVAYREGRYFLTDISRNGIRVAGSHERLRKGHARLISDGEVFELGA LAIRARLLEPPQPAGGLQAASAVTIPEDAFLSLGPSHQLDLDCRMHAFSQDLEALNESADEQQVWTDRYGADREHVVFPRREEPAVEVATVQAAMTVPTD EEFWPQFAAALGLDLNTLDQPGRQALAIKVARLFRLTIEGLQQSLRTRDELNNELDTAPFGSHGVGLNPLKACSDIDAAVAAMLDISALGQMPAVRAITQ AHRELQAHQVALLAACRSTLRNARAAFEPSYLLGCFESSGKSVGFFSDGGHWRAYQRHYQRLVAQERLNDRPLGGDFAKAYEEQVRLISSLHIDFPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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