Pseudomonas fluorescens AU6308, MZ32_RS04175

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006470
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006470
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.170 - IPR038404 TRAP transporter solute receptor DctP superfamily 25 327 1.9E-90
PIRSF PIRSF006470 DctB IPR004682 TRAP transporter solute receptor, DctP family 1 327 1.0E-122
FunFam G3DSA:3.40.190.170:FF:000001 TRAP dicarboxylate transporter, DctP subunit - - 25 326 1.9E-122
NCBIfam TIGR00787 JCVI: DctP family TRAP transporter solute-binding subunit IPR004682 TRAP transporter solute receptor, DctP family 30 274 7.9E-74
CDD cd13674 PBP2_TRAP_SBP_like_1 - - 27 322 0.0
PANTHER PTHR33376 - IPR018389 TRAP transporter solute receptor DctP 4 324 3.5E-122
NCBIfam NF037995 NCBIFAM: TRAP transporter substrate-binding protein DctP - - 29 299 3.1E-51
Coils Coil Coil - - 266 286 -
Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 IPR018389 TRAP transporter solute receptor DctP 30 311 1.2E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.