Pseudomonas fluorescens AU6308, MZ32_RS22305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6308 Scaffold_180, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGTGCGGACTTTATCGACAACCCTTCTCAGGAGTCGAAACTGGAGAGTTGGGCGGTGCAACTCAATATGAGTTCACGCACCTTGGCTCGGCTGTTCCA GAAAGAGTTGGGCATGAGTTATGGCGAGTGGCGCAAGCGCACGCGGCTGCTGCTCAGCATGCAGCGGCTGGCCAGTGGTGCCTCCATCCTTGAAGTGGCA TTGGAGCATGGTTATCAGAGTCCGAGTGCATTTACCGCGATGTTCAAACGCACCATGGGCTACACCCCGAGTAACTGTCGCTTGGTCTGAATCTGACTGG CGATAGCACCACCTCCTTTTGAACATGGCCCCGCCTCCAGGCAGGGCCATGTTTACCTGTGCCTGGTGTATGGAGCCTGCGGCGCAGAGGGCGCGCCGGC ACATTGTCCCAATCGAAACGATGGTTGTCTGGAACTCGGGAGATGCGCAAGCGGTTGCTCTCTTACCCTGCGTCTCTACTTGGCATTCTGGATTTCTTCG
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| DNA Sequence for Gene |
>MZ32_RS22305
ATGGGTTCGCCTTCTTTTTTCCCACGGCATGGCCGTCTCTCGTTGCTCGGCGTGGCGGCGGTGGTGTTGGCGGGTTGTTCGTCCTGGGTCGCCCATACGC CGGCACAGCCACATCCGGAACGCATCAATGCCCTGAGCCACCTGCCCCAAGGTGTCTCGGACCAAGCGTTACCTGAGCGCTGGTGGCAGTTGTATAACGA TCCGCAACTCGATGCGCTGGTGCAACAGGCGTTGCTGCACAACCGCGACCTGGCGGCGGCCCAGGCCCATGTGCAAGCGATGCTGGCCGGGATCCAGCAG GCCGATGCCGAGCGCTGGCCGTCCACCCAGGCGTCGCTGGGGGCCGCTTATGGCAAGACGGCCGATGACCAGACGCTGGCCAAGGCCACCGATAGCCATG CGCCGTCAGAGTGGGCATTCAACCCAGGCTTCGAGCTGGCTTATCAAGTGGATGTGTGGGGCCAGGTTCAGCGCACCATTGAACGTGCCCAAGTGCAAAC CGCAGCGGCGCAGGATGCCGAGGACTTGCTGCGAATCACGGTCGTGGCGCAAACCACTCGCGCCTATGTGAATGCCTGCGCCCTGGGGGCGCGTGCCAAG GTACAGCGCCATTCGTTGGACGTGGTCGGGCATAGCCTGGCGTTGACCGATCGCCAGCGCCAGGCCGGTGTGGTGACCGACCTTGAATACAGCCGCATGC AAGCCCTGCAAGGCGAAACCCAGGCGTTGCTGCCGATGTTGGAGGCGCGTCGACAAGCCGCGCTCTACGAATTGGCCATGCTGACCGGCGTCGCTGAACT GGACCAAGGCTCTGGCGCCGCAACGTGTGAAGTGGTGCCCCAACTCAATGCCGAGTTGCCGGTGGGTGATGGCTGGCAACTATTGGCGCGCCGCCCCGAC ATACGTCAGGCCGAGCGCGCGTTGCAGGCGGCCACGCTGCAAGTGGATATCGTCCAGGCCGACCTGTACCCCAAGGTGACCTTCGGCGCTTCAGTGTCCT CCTCGGCCAACAAACCCCATGAGCTGGGGGACAGCAGTGCGGTGATGTTCGGCATCGGCCCACTGATTACCTGGCAGTTCCCTAATTGGCAGGCCAACCG CGCGCGGGTCAAGCAGGCACGGGCACTCGAGCAGGTGGAGGTCGCGCAGTTCGAGGCCAGCGTCCTCAAGGCCCTCAAGGAGGTGCGCCAGGCCCTGGCG TTGTACGACGGCGAACGGCAGCGCCACGCGGCCTTGAGCCGGGCGCTGGACAGCAGCCGCCAAGCCTACAAGTTGGCCCAATTCAACTACGACGCCGGTT CTATCGACTTTCTCGACGTGCTGGACAGTGAGCGTGAACTGATCCGCTTGCAGGCCACGCGCGCCGACGCCGATGGCCAGTTACTGCAACGCCAGATCGG CCTATTCCGTGCCCTTGGTGGCGGTTGGCAGTCCGGCGCCGTCGATACCCCGGCCGCTGCGCCCACCCACGCGTCTATCCCTTCTTCCGGTACCCAGCCA TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATATCGCCGTTGATGAAAAAACTGCTGTCCAGGACGAGCAGGAGAATGTGTTCGAGCAACTTATGCATGCGCGTAAGCAACGGCGCAAAAGAAACCTGAT CCTGCTGGGCGGCGCCGGGTTGTTGATCGCGGCGGTGGTGTTCGGCGTGTACTGGATGACCGTCGGCCGCTATCTGGAGCAGACCGATGATGCGTATGTG CGGGCCGACTGGATCCCCATCAGCCCGAAAGTCTCAGGCTACGTGGCCGAGGTGATGGTAGAGGATGATCAGCCGGTCAAGGCAGGGGATGTGCTGGTGC GCATCGAGGACCGTGACTACCAGGCCCGCTTGGCACAAGCCCGCGCAGAACTGGCCGAGACCCAGGCCTCGGTGGCCGCGCAAGAGGCCAACTTGACAGT CACTGACAGCCTGATCGCCCAGCAAAAGGCCGGGGTTGCCCAGGCTGAGGCCCATGCGCGCAGTGTGGCCGCTGAGTTACGCCGCGCAAGCCTCGACCAG
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| Amino Acid Sequence |
>multidrug transporter
MGSPSFFPRHGRLSLLGVAAVVLAGCSSWVAHTPAQPHPERINALSHLPQGVSDQALPERWWQLYNDPQLDALVQQALLHNRDLAAAQAHVQAMLAGIQQ ADAERWPSTQASLGAAYGKTADDQTLAKATDSHAPSEWAFNPGFELAYQVDVWGQVQRTIERAQVQTAAAQDAEDLLRITVVAQTTRAYVNACALGARAK VQRHSLDVVGHSLALTDRQRQAGVVTDLEYSRMQALQGETQALLPMLEARRQAALYELAMLTGVAELDQGSGAATCEVVPQLNAELPVGDGWQLLARRPD IRQAERALQAATLQVDIVQADLYPKVTFGASVSSSANKPHELGDSSAVMFGIGPLITWQFPNWQANRARVKQARALEQVEVAQFEASVLKALKEVRQALA LYDGERQRHAALSRALDSSRQAYKLAQFNYDAGSIDFLDVLDSERELIRLQATRADADGQLLQRQIGLFRALGGGWQSGAVDTPAAAPTHASIPSSGTQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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