Pseudomonas fluorescens AU6308, MZ32_RS07910 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6308 Scaffold_120, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGCACGAAGATAGCGTTCTGGAAATGCTTCGCAACGACGAAGCATTCGCCCTCGAATATTTATCTGTCGCGCTTGAGGAAATAGATGAAGCCGGTGGC GAGGACGCTTTCCTTGTCGCTATCCGTCGAGTGGCGGAAGCTCGTGGTGGGATGCTCAGCTTGTCGCAGAACACAGGACTCAATCGAGCAAACCTCTACA GGTCCATCGGCGTCGGCGGTGATCCTAAGCTCTCCACTTTGCTTAAAGTCCTCCAGGCGTTAGGTGTGGGCATGTCTAAAGTGGTATCGCACCGAACAGA ACAAGACGTCCAGGCTTAAGCGCGCGCCAGTAGCTATGGGGATTACCCGGCGCAGCACTCGTCGTATTTCCCTGCATAAAGCTGGTCAAGTGCGCTGCCC GTCGATAGAATTGCGCACTTTTTGATCAGAGGCGCACCAAGCGCCCATCCGTTGCCTTGTCGTGCACGACCGGCAGCGTCATTCAATACCGAGGTTAGAC
|
|
| DNA Sequence for Gene |
>MZ32_RS07910
|rimO
ATGTCCACCACCATCGCAAAAGCCAACCCTAAGGTTGGCTTTGTTTCCCTGGGTTGCCCGAAGGCGCTTGTCGACTCCGAGCGCATCCTCACGCAATTGC GTATGGAAGGCTACGACGTCGTGTCCACTTACCAGGACGCCGATGTGGTGGTGGTCAACACCTGCGGCTTCATCGACTCGGCCAAGGCCGAATCGCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTGACCGGTTGCATGGGGGTGGAAGAAGGCAATATCCGCAACGTGCACCCGAGCGTGCTG GCCGTGACCGGCCCGCAGCAGTACGAGCAGGTGGTCAACGCCGTGCACGAAGTGGTGCCGCCACGTCAGGACCACAACCCGCTGATCGACCTGGTGCCGC CCCAGGGCATCAAACTGACCCCGCGTCACTACGCGTACCTGAAGATTTCTGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTGAGCCGTCCGGTCGGTGATGTGCTTGATGAGGCCCAGCGCCTGGTCAAGTCTGGCGTCAAGGAGCTGCTGGTGATCTCCCAGGACACCAGC GCTTACGGCGTCGATGTGAAATACCGCACCGGCTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAGCTGTGCGAAGCCCTCAGCAGCCTGGGCG TGTGGGTGCGCCTGCACTATGTTTACCCTTACCCGCACGTGGACGAGTTGATCCCGTTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTGCTCAAGGCGATGAAACGCCCGGCGTTCGAAGACAAGACCCTGGCACGCATCAAGAACTGGCGCGAGATCTGCCCGGAG CTGATCATCCGCTCCACCTTCATCGTCGGTTTCCCCGGCGAGACCGAGGAAGACTTCCAGTACCTGTTGGACTGGCTGACCGAAGCGCAGCTAGACCGCG TCGGTTGCTTCCAGTACTCGCCGGTGGAAGGTGCACCGGCCAACCTGCTGGACTTGGCCGTGGTACCGGACGACGTCAAGCAAGACCGTTGGGAGCGCTT CATGGCGCACCAGCAGGCCATCAGCTCGGCACGCCTGCAACTGCGCATCGGCAAGGAAATCGAAGTGCTGATCGATGAAGTCGACGAGCAAGGCGCGGTA GGTCGTTGCTTCTTCGACGCCCCAGAAATCGACGGTAACGTATTTATCGACGATGCCAGCGGCCTGAAGCCGGGTGACAAAGTCTGGTGCACCGTGACCG ACGCCGACGAGTACGACTTGTGGGCTGAAAAGCGCGACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGCACGGTGATAAAAAAGCCTCGCCTCTGAGAAGATGCGGGGCTTTTTTAGGTCTATCGTATTGTCCATCAACCCCGAATACAGCAAGGGACAGCGGGT ATGCGTCAGCATTCGGTGATTCACACACCTAAAACCAGCGACTACACGCGCCTGGTGCAGATCTGGGAGGACTCGGTACGCGCTACCCACGACTTCCTCC CGGACAGCTATATCGACATGTTGAAAAACCTGGTGCTGACCCGGTACCTCGATGCGGTCATGCTGATCTGCACCAAGGACTCATGCCAACGCATCACCGG GTTCGCCGGAGTGTCCGCGGGCAAGGTGGAGATGCTGTTTATCGACCCGCACCACCGTGGCCAGGGACTGGGCCGGCAATTGCTGGGTTACGCGATCGAA CACATGAATGCCGATGAACTGGACGTCAACGAACAGAACCCCCAGGCCCTGGGTTTTTACCTCAAGCAAGGCTTCGAGGTGATCGGGCGAACAGAACATG
|
|
| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTIAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVL AVTGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPE LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDLAVVPDDVKQDRWERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAEKRD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|