Pseudomonas fluorescens AU6308, MZ32_RS07605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6308 Scaffold_120, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGTGGGTAACACAACCGCAGGACGTGCTGTGGCGCCGTACCAAGCTTGGCCTGTTCACCACGCCGCAAGAGCAGGAAAACCTGCAGCGCTACTTGTCCA AGGTCGAGCAGAACCGCAGCAAGATCGAAGCCGCCTGACCGCCCCAGTGTAGGAGCGAGCTTGCTCGCGAAAAACCCGAGAGCGCCGCGTTTATTCAGCA TAAACGCGGCGTTTTTGCGTTTTTCGCGAGCAAGCTCGCTCCTACGGACTATTCGGTTTTCCGAACGCACACCTCTGCCCTATTCGGTTTGCCGGACTAC CGACCGAAAATACTGCCGACACAAAAAGTTAATTTCCATATAAATCATGAAGTTATCCTTTTGTTTTCGGTATGGCACGACTCATGCTCTACACTCTTCA ACGATTGCCTGAGGCGCCTTAGGAGCCGTCACGGGCAGTCGCTTTACAAGAGAGCCGTTCAGCTGGCTTCATAAAAAAAACAAATGTCGAGGAAGTATTG
|
|
| DNA Sequence for Gene |
>MZ32_RS07605
ATGCGCATCGTTCCCCATATCCTGGGCGCAGCTATCGCTGCTGCTCTGATCAGCACTCCAGTTTTTGCCGCCGAACTCACCGGCACACTGAAGAAAATCA ACGACTCCGGCACCATCACTCTCGCTCACCGCGACAGCTCCATTCCGTTTTCCTACATCGCGGATGGCTCGGGCAAACCCGTGGGCTACTCCCACGACAT CCAGTTGGCCGTTGTCGAGCAACTGAAAAAAGACCTGAACAAACCCGACCTCAAAGCCAAGTACAACCTGGTGACCTCGCAAACCCGTATCCCGTTGATC CAGAACGGCACCGCGGATCTGGAGTGCGGCTCCACCACCAACAACACCGAACGCGCCCAGCAAGTTGATTTCACCGTCAACATCTTCGAAATCGGCACCC GCCTGCTGGTCAAGAAAGACAAGGAAGGCAAGCCGTCCTACGCTGACTTTGCCGACCTGAAAGGCAAAAACGTCGTGACCACCGCCGGTACCACGTCCGA GCGCATCATCAAGGCGATGAACGCCGACAAGCAGATGGGCATGAACGTTATCTCCGCCAAAGACCACGGCGAATCCTTCCAGATGCTCGAAAGCGGCCGC GCCGTTGCATTCATGATGGACGACGCCCTGCTGGCCGGTGAAGAAGCCAAGGCCAAGAAGCCGGACGACTGGGTCATTACCGGTACTCCGCAGTCCTTTG AAGCCTACGCTTGCATGGTTCGCAAAGGCGACCCGGACTTCAAGAAAGCCGTGGATGACGCCATTGTCGCCCTGTACAAGTCCGGCGAGATCAACAAGAT CTACGCCAAATGGTTCGAAAGCCCGATCCCACCGAAAGGCCTGAACCTTAACTTCCCGATGAGCGACAAGGTCAAGGAGCTGATCGCTAACCCTAGCGAC AAACCAGCGCCAGAAGTAAAAATCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACCTGACTAAGCTTATGTCCTGAGGGAGCCAACCCTCCCTCAGGCGTCTGTAATTACCTGCTGGTTTTAACTTGGAACACTCGACCTGGCGGTTTTCGA GCCGATCGTGTGTGCCTGGCGTTCAACGTCAGGCGGGAACGGATCTTCCCCAAGCGGGTGCTTGTACATCGATCGATCTCGAGGGGAGACCCTAATGAAT TACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGCGTGGGCAGCGAGACTTATCTCGACTGGTACCTCTCCGGGCTGGGCTGGACCATCGCCATCG CTGTCGTGGCATGGATTATCGCCTTGCTGCTGGGCTCCATTCTGGGGGTCATGCGCACTGTGCCAAACCGCCTCGTATCGGGCATCGCGACCTGCTACGT GGAACTGTTTCGTAACGTGCCGCTGCTGGTTCAGCTGTTCATCTGGTACTTCCTGGTACCGGACATGCTGCCGCAGAACCTGCAGGACTGGTACAAACAA
|
|
| Amino Acid Sequence |
>ABC transporter
MRIVPHILGAAIAAALISTPVFAAELTGTLKKINDSGTITLAHRDSSIPFSYIADGSGKPVGYSHDIQLAVVEQLKKDLNKPDLKAKYNLVTSQTRIPLI QNGTADLECGSTTNNTERAQQVDFTVNIFEIGTRLLVKKDKEGKPSYADFADLKGKNVVTTAGTTSERIIKAMNADKQMGMNVISAKDHGESFQMLESGR AVAFMMDDALLAGEEAKAKKPDDWVITGTPQSFEAYACMVRKGDPDFKKAVDDAIVALYKSGEINKIYAKWFESPIPPKGLNLNFPMSDKVKELIANPSD KPAPEVKI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|