Pseudomonas fluorescens AU6308, MZ32_RS03095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6308 Scaffold_100, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACCCCAAGGTACCCTGCTGGCCGTGCAACAGGGTGCGGTAGCGGTGTTTGCCGATCGCCATGACGGCGCCGCACGCCAGGTGATCAAGCCAGGCGAAC AGGTGATGTTCAACCGTAGCGGCATTCGCCCTTCCCCCAATAACGGCCTGGACCCCTGGGCCTGGAGTGACGGCGTGATCAGCGCCCACAACATGCGCCT GGACGACTTCCTGGCCGAACTGGGCCGCTATCGCAATGGGTTGGTGCGTTGCAGCGAAGCCGTGGCAGGGCTGCGGGTGTCGGGCACTTACCAACTGGAG GACACCGACCAAGTGCTCAAGTTGGTCACTCAATCGCTGGCGATCGATGTGACCTACCGCAGCCGCTACTGGGTAACCGTCTCCGCTCGGGTGTGACCGG CCGAAAATAAATGAGGTGAATTCTCATTGCCATTCGACCTGTAAGGAAGGGCCGATCAACAGGCCGGTTTGTCCACTTCCTTCAGGAGCATCCCGCGGTC
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| DNA Sequence for Gene |
>MZ32_RS03095
ATGCAAGCGTTCCCCTCCAAACGTTCTCTTCTCAAACACGCGGTGCAGGCCGCCCTCCTTGGCGCCTGCCTGGGCGGCGGCGTCTTGCCACTCGCCGTGA TGGCCGACTCCGCTAGCGCTGATACCCAGGTTCGCGCATGGGCGATCGCCCCCGGCTCCCTTACCTCGGCACTGGATCAATTTGCCCGTCAGGCCGGCAT CAGCTTGTCCTACGATGCCACCAGCGTTGCCGGTAAAACCAGCACAGGCCTGAGCGGCAACTTCGATCGAGAACAGGCCTTGGGCCAGTTACTGCGCGGC CAGGGCCTGCAAGCCCAGCGCCAAGGCAAGGATATCTGGCTGCTGTTGCCACAAATGGCCGACACCGGTGCCCTGAACCTGAGCGCGACCACGGTGACCG GCCAACGCCTGGGGGCCCTGACCGAAGGCACCGGTTCGTACACTACCGGCGCGGTCACCATCGGCAAAGGCCAACACAGCCTGCGGGAAACGCCACAGTC AGTGAGTGTGATGACCCGCCAATTGATGGACGATCAGAATGTCACCACCATTGACGATGTGATGGAACGTACACCGGGGATCACCACCTACGAGTCGCCC ATGGGCGGCAAGTATTTCTATTCCCGTGGATTCAAGATGCTCGGCCAGTACCAGTACGACGGCGTACCGCTGGACATGGGCAAGGACTATGTGCAGGCGG ACAGTTTCAGCGCCAACATGGCGATCTATGATCGCGTGGAAGTACTTAAAGGCGCAGCCGGCATGCTCAAGGGGGCCGGCACGGCCAGCGGTGCGGTGAA CTTCGTGCGCAAGCGGCCACAGGCCACCCCGACCTCAAGCCTGATGCTGTCCGCCGGCACCTGGGACAACTACCGCGCCGACGTCGATACCGGTGGCCCG CTCAATGACAGCGGCACCGTGCGCGGCCGCGCGGCGTTCAGCCAACAGGATCGCGGCTCCTACATGGACATTTCCAAGCGCCAGGACCAGGCCTTCTATA CCGCACTGGACGTCGACCTGAGCCCCGACACAACCCTGGGCGTGGGAGCCAGCTACGAAGACGTCGACGCCAGCCCCTGTTGGGGTGGCTTGCCGCGCTA TAGCGATGGCAAGAGCGCCAGGTTAAGCCGTTCCACCTGCCTGGGCCAATCCTGGAACGACTGGCAAAGCCGACGCACGACGTTCTTCGCTGACCTCACC CATCACTTCAATGACGACTGGCAAATCAAAGTCGCCGCTGTGCACAGCCGCAACCTGCAAGACACCAAGTACGCCGCCAGCGAAGGTACCATCGCCTATG GCGCCCCAACCCCCACCGCCAACTCCTACGCAGCATTGATGGACTATGAGCACAAGGACTTCGGCCTCGACGCTTACGTCGATGGCAAGTTCCAAGCCTT TGGCCTGGAACACGAACTGATCCTTGGGGCCAACGGCAGCCGAGGCACCCAGGATGACGTATTCGCGATCCAGAACCTGCCCACGCGCCAGAGCATTTAT CAGCCCGACCACCACTTCCCCGAACCGGCCAATGACACCTTCTGGCCAAACATGTACCGCGGTGGCACGGTCAAGGAAACCGCTACCCAGTATGGTACTT ACGCCACCTTGCGCCTGCGCCTGGCCGAGCCCTTGATGTTGATCGTGGGCAGCCGTGTGAGCTGGTACGAAAACCGTCGGCAGTCCAACACCCTGGGTTG GGGCGAGTGGAGTGTGCAAGATGCGCGCACCAAGGAATCCGGTGAAGTCACGCCGTTTGCCGCTCTGATCTACGACCTCGACGAACACCTTTCCCTGTAC GCCAGCTACGCCGATATCTTCCAGCCGCAGAGCTCTTATGCCACCGCCGACGGCGCGGCACTCAAGCCCAAGATGGGGGACAACTACGAGCTGGGTATCA AGGGCGAATGGTTCGACGGGCGTCTCAACAGTTCCGTAGCGTTGTTCCGGGCCACAGAGAAAAACGGCGCCGAAACTGACTTCCTGAGTTTCTGCCCAAC TTCGTCCGATGGCTACTGCTATACCGACACTGCCAAGGTCCGCGCCCAGGGCGTCGAAGCCGAAGTCAGCGGCCAGTTGCTCGAACGTCTGCAAGTCTCG GGGGGCTACACCTACACTCAGACCAAATCGCTGAAAAACATTGATACCGCTATCGAAGGAGGCGCGTCCAACACCTATGTACCCCGCCACATGTTGCGCA TGTGGGGCGATTACCAGCTGGATGGCGCGCTGTCCAAATGGAGCGTGGGTACGGGGGTCAATGCCCAGAGCGGCAACTATCGCATGCAGCAGGGCCTCAA GCTCGAACAGGCCGGCTATACGGTTTGGGATGCACGATTGGCCTACCGCGTAGATGACACTTGGACCGTCGCCCTTAACGCCAAGAACCTCTTCGACAAA AACTATTACCAAACCGTGGGCACAGCCTCATGGGGCAATTTTTATGGCGAACCGCGTAATTTCACGGTCAGTCTGAAAGGCACCTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGCTCAATCCTCTTGAGGGCACGCGCCTGGTGCGTTGCGCCCTCTTTTCCCACGCCTCCCCGGGACCCGTCAAAAAAGTGTTTCCTGACAAACAGGAA AATTCACACTTTTGTTCCTACACTCAAAATCACACCCCGAGACCGGGTCCTCTTGCACAAGGAATGTCAACAAAATGACACAAGAAGGAACATTTAAAGT GTCTATGATATCATCGCTGAAACAAGGTCAAATTATTGACTGAAAGAGAAAAGGAAGTCCTCCTGTAGTAGCCACTGCCCTTGCAAAATTCTTTCATTTG GAGCGATCCATCCGAAGGAAGGGATGCGTTTTACCCAGCGTAGTCCGCTGCCGTCTGGTTCAGACGACCGAATAGAACGCCTGGTGTGCAATGAGGGATG TTTGTATGCGAGAGAAGTCGTCAGTTGTCAGCTTGTTTTTGACCCGAGCAGGGTTTGTCGAGTTTTTTGTGGTTTTCGTCAAGCTGGTCCACGGTCTGAC
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| Amino Acid Sequence |
>TonB-dependent receptor
MQAFPSKRSLLKHAVQAALLGACLGGGVLPLAVMADSASADTQVRAWAIAPGSLTSALDQFARQAGISLSYDATSVAGKTSTGLSGNFDREQALGQLLRG QGLQAQRQGKDIWLLLPQMADTGALNLSATTVTGQRLGALTEGTGSYTTGAVTIGKGQHSLRETPQSVSVMTRQLMDDQNVTTIDDVMERTPGITTYESP MGGKYFYSRGFKMLGQYQYDGVPLDMGKDYVQADSFSANMAIYDRVEVLKGAAGMLKGAGTASGAVNFVRKRPQATPTSSLMLSAGTWDNYRADVDTGGP LNDSGTVRGRAAFSQQDRGSYMDISKRQDQAFYTALDVDLSPDTTLGVGASYEDVDASPCWGGLPRYSDGKSARLSRSTCLGQSWNDWQSRRTTFFADLT HHFNDDWQIKVAAVHSRNLQDTKYAASEGTIAYGAPTPTANSYAALMDYEHKDFGLDAYVDGKFQAFGLEHELILGANGSRGTQDDVFAIQNLPTRQSIY QPDHHFPEPANDTFWPNMYRGGTVKETATQYGTYATLRLRLAEPLMLIVGSRVSWYENRRQSNTLGWGEWSVQDARTKESGEVTPFAALIYDLDEHLSLY ASYADIFQPQSSYATADGAALKPKMGDNYELGIKGEWFDGRLNSSVALFRATEKNGAETDFLSFCPTSSDGYCYTDTAKVRAQGVEAEVSGQLLERLQVS GGYTYTQTKSLKNIDTAIEGGASNTYVPRHMLRMWGDYQLDGALSKWSVGTGVNAQSGNYRMQQGLKLEQAGYTVWDARLAYRVDDTWTVALNAKNLFDK NYYQTVGTASWGNFYGEPRNFTVSLKGTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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