Pseudomonas fluorescens AU6308, MZ32_RS01285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU6308 Scaffold_100, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCCAGGCGTTATATCCAGCCGTCCCACGTGGTGCGCATTGCACCGATGATTTATGGCGGTTCGTTCCGCCGTGATTCCAAACTGGCCGCCGAGCACGC CAGCAAAGTGCGCTCGGCCGGCAAGCTGGGCTACTACTGGCAACTTTTTGCCGGGCTGGGCTGGACCAGCATTCATTGGCTGCACAAGATCCGCCAGCCC ACCCTGGTGCTGGCCGGGGACGATGACCCGCTGATCCCGCTGGTCAACATGCGCATGCTCGCCTGGCGCATCCCCAATGCACAGTTGCACATCATCGATG ACGGCCACCTGTTCCTGATCACCCGGGCCGAAGCCGTGGCGCCGATCATCATGAAGTTTCTCGAAGAGGAGCGCCTGCGCGCCGTGATACATCCGCGACC GGCGGTGTGAAGGACCACACCACCGCGCAACTTGCCAGGAACCGACTATGGTTCTGGATTGGCGTGCCTGCTTGATGACTTGACGAAGGAGTGTTGGCTC
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| DNA Sequence for Gene |
>MZ32_RS01285
ATGCGAGAAAGACCCGTGACGAACCCGGCGCCCACCCCCGCTGCGTTCATCAACGCGCAAAATGCGATCACCGGCCTGCGCGGCCGGGACTTGCTGTCGA CCCTGCGTACCGTCGCCGCGCACGGCCTGCGCAACCCGGTGCACACCGCCCGCCACGCCCTGGCCCTGGGCGGCCAGCTGGGCCGCGTGCTGCTGGGTGA GACCGTGCACGAACCCAACCCCAGGGACCATCGCTTCAGCGACCCCACCTGGAAGCTCAACCCGCTGTACCGGCGCAGCTTGCAAGCGTATCTGAGCTGG CAGAAACAGACGCGCCACTGGATCGATGACAGCAACCTCAGTGACGATGATCGCGCCCGCGCGCAGTTCGCCTTCGCCCTGCTCAACGATGCCGTGTCCC CTTCCAACACGCTGCTCAACCCGCTGGCGATCAAGGAGTTGCTCAACTCCGGCGGCAACAGCGTGGTACGCGGCGTGAGTAACCTGTTCGAAGATCTGCT GCACAACAACGGTTTGCCGCGCCAGGTCAGCAAGCACGCCTTTGAAGTGGGCAAGACCGTGGCGACCACGCCCGGCTCGGTGGTGTTTCGCAACGAGCTG CTGGAGCTGATCCAGTACAAGCCCATGAGCGAAAAACAGTACGCCAAGCCGCTGCTGGTGGTGCCGCCGCAGATCAACAAGTACTACATCTTCGACCTGA GCCCGGCCAACAGCTTTGTGCAATACGCACTGAAAAACGGCCTGCAGGCCTTTATGGTCAGCTGGCGCAACCCGGACGTGCGGCATCGCGAATGGGGCCT GTCCACCTACGTCGCGGCGCTGGAAGAAGCGCTCAACGTATGCCGGGCCATCACTGGCGCCCGCGAGGTCAACCTGATGGGCGCCTGCGCCGGCGGCCTG ACCATCGCCGCGCTGCAAGGCCACCTGCAAGCCAAGCGCCAGTTGCGGCGCATCTCCAGCGCCAGTTACCTGGTAAGCCTGCTGGACAGCCAAATCGACA GCCCCGCAACATTGTTCGCTGATGAACAAACCCTGGAAGCCGCCAAGCGCCGCTCCTACCAGCAAGGCGTGCTGGATGGCCGCGACATGGCCAAGATATT TGCCTGGATGCGCCCCAACGACCTGATCTGGAATTACTGGATCAATAATTACCTGCTGGGCAAGGAACCGCCGGCGTTCGACATCCTGTACTGGAACAAC GACAACACGCGTCTGCCCGCCGCCCTGCACGGCGACCTGCTGGACTTCTTCAAGCACAACCCCCTGAGCCATCCCGGTGGCCTGGAGGTATGCGGCACGC CCATCGACTTGCGCAAGGTCTCGGTGGACAGCTTCAGCGTGGCCGGCATCAATGACCACATTACGCCGTGGGACGCGGTGTACCGCTCCACGCAACTGCT GGGCGGCGAGCGACGCTTTGTGCTCTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCACCGGGCAACCCCAAGGCCAACTATGTCGAGAACCTCAAG CTGAGCAGCGACCCACGGGCCTGGTATTACGACGCCCAGCACGTCGAAGGCAGTTGGTGGCCACAATGGCTGGAGTGGGTACAAAAACGCTCCGGCGTAC AACGCGAAACCCTCACCGCCCTGGGCAACCAGAATTACCCACCGATGGAAGCGGCGCCGGGTACTTACGTGCGTGTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCAGCAATCAACTTTAAGAAGACTGGATGAAGACCCGCGACCGTATCCTTGAATGCGCCCTGCAGTTGTTCAACCACAAGGGCGAACCGAACGTATCG ACCATGGAGGTGGCCAATGAAATGGGGATCAGCCCCGGCAACCTCTACTATCACTTCCATGGCAAGGAGCCGTTGGTGCTGGGGCTGTTCGAGCGCTTTC AGTGTGAGCTGGCGCCACTGCTGGACCCTCCTGCGGATGCGCAACTGGGAGCTGAGGACTACTGGCTGTTTTTGCACCTGATTGTCGAGCGCATGGCCCA CTACCGGTTCCTGTTCCAGGACTTGTCGAACCTGGCGGGGCGCCTACCGAAGCTGGCCAAGGGGATCCGCCACTTGCTCACGGCGCTCAAGCGCACACTG GCGTCATTGCTCGCGCGCTTGAAGGCGGCGGGGCAACTGGTCAGTGATACCCAGGCGTTGGGGCAACTGGTGGAGCAGATCACCCTGACATTGCTGTTTT
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVTNPAPTPAAFINAQNAITGLRGRDLLSTLRTVAAHGLRNPVHTARHALALGGQLGRVLLGETVHEPNPRDHRFSDPTWKLNPLYRRSLQAYLSW QKQTRHWIDDSNLSDDDRARAQFAFALLNDAVSPSNTLLNPLAIKELLNSGGNSVVRGVSNLFEDLLHNNGLPRQVSKHAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYAKPLLVVPPQINKYYIFDLSPANSFVQYALKNGLQAFMVSWRNPDVRHREWGLSTYVAALEEALNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRISSASYLVSLLDSQIDSPATLFADEQTLEAAKRRSYQQGVLDGRDMAKIFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLRKVSVDSFSVAGINDHITPWDAVYRSTQLLGGERRFVLSNSGHIQSILNPPGNPKANYVENLK LSSDPRAWYYDAQHVEGSWWPQWLEWVQKRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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