Pseudomonas fluorescens AU10973, MZ33_RS22680 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU10973 Scaffold_230, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTACCGAGAACTGGCGCGTGGCGTGCATCCGGACCGCTTCGCTGACGCTTCCGAGCGTGAGCAACGCCTGGCGCTGGAGCAATCGGCCAGCCTCAACG AAGCCTATCAGACGCTCAAAAGCCCTCCTAAGCGCGCGCGCTACCTGCTCGCGATGAACGGTGGCGAGTTGCCGCTGGAAGTCACGGTTCACGACCCGGA CTTCCTGATGCAACAGATGCAGTGGCGTGAAGAGCTCGAAGACTTGCAGGACGAAGCCGATCTGGCGGGCGTCGCGGTCTTCAAGCGTCGTCTGAAAACG GCCCAGGATGAGCTCAACGAAAGCTTCGCAGCCTGTTGGGATGATGCAGCGCAACGCGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGACA AGCTCACCTACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGTGCTGCCCGTGATGCACGCCTGATAGACAGATAAGACCTGATTACC
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| DNA Sequence for Gene |
>MZ33_RS22680
|hscA
ATGGCCCTACTGCAAATCGCCGAACCCGGCCAAAGTCCTCAACCGCACCAGCGTCGCCTGGCAGTCGGGATTGACCTGGGCACCACCAATTCCCTGGTTG CTGCCTTGCGCAGCGGCCTGTCCGAGCCGTTGCCCGACGTCAACGGCCAGGTAATCCTGCCATCCGCCGTGCGTTATCACGCTGATCGCACCGAAGTCGG TGAGTCGGCCAAGCTGGCCGCGTCTACCGATCCCTTGAATACCGTGCTGTCGGTCAAACGCTTGATGGGTCGTGGTCTGTCCGACGTCAAGCAATTGGGC GACCAGCTGCCGTACCGCTTTGTCGGCGGCGAATCCCACATGCCGTTCATCGACACTGTCCAGGGCCCGAAAAGCCCGGTAGAAGTGTCGGCCGATATCC TCAAGGTGCTGCGCCAGCGCGCGGAAAAAACCCTGGGCGGCGAACTGGTGGGTGCAGTGATCACCGTCCCGGCGTATTTCGATGACGCTCAGCGCCAAGC CACCAAGGACGCGGCGAAGCTCGCCGGCCTGAACGTGCTGCGTTTGCTCAACGAGCCGACTGCAGCCGCCGTGGCTTATGGCCTGGACCAGCATGCAGAA GGCTTGGTCGCTATTTACGACCTTGGCGGCGGCACCTTTGATATTTCGATCCTGCGCCTGACCGGCGGCGTGTTCGAAGTGCTCGCTACCGGCGGCGACA GCGCCCTGGGGGGTGATGACTTCGATCACGCCATTGCGAGCTGGATCATCACCAGCGCCGGCTTGTCTGCCGACCTGGACCCGGGCGCACAGCGCAACCT GCTGCAAACCGCCTGCGCCGCCAAGGAAGCGCTGACGGACGCTGCGAGCGTCGAAGTGTCCTACGGCACGTGGTCGGCCCAGCTGACCCGTGAAGCCTTC GATGCGTTGATCGAGCCGATGGTCGCCCGCAGCCTCAAAGCCTGCCGCCGCGCCGTGCGTGATTCCGGTATCGAGCTGGAAGACGTAGGTGCCGTGGTCA TGGTCGGTGGCTCCACCCGCGTGCCGCGCGTGCGTGAAGCCGTTGCCGAAGCCTTTGGTCGCCAGCCGCTGACGGAAATCGACCCGGATCAAGTGGTCGC CATCGGCGCCGCGATCCAGGCCGATACTCTGGCCGGTAACAAACGTGATGGTGGCGAACTGCTGCTGCTCGACGTGATTCCGCTGTCCCTGGGACTGGAA ACCATGGGGGGGCTGATGGAGAAGGTGATTCCGCGCAACACCACCATCCCCGTCGCCCGTGCCCAGGACTTCACCACTTACAAAGATGGCCAGACGGCCA TGATGATTCACGTGCTGCAAGGCGAGCGTGAGCTGATCAGCGACTGCCGCTCCCTGGCACGCTTTGAATTGCGGGGTATCCCGGCGATGGTGGCGGGTGC GGCGAAGATTCGCGTGACCTTCCAGGTCGATGCCGACGGCTTGCTCAGCGTCGCTGCGCGTGAATTGGCCTCCGGTGTTGAAGCCAGCATCCAGGTCAAG CCGTCCTACGGCCTCACCGACGGCGAAATCGCCAAGATGCTCAAGGACTCGTTCCAGTACGCCGGCGATGACAAGGTCGCCCGTGTGTTGCGTGAGCAAC AAGTGGATGCCCAGCGCCTGCTCGAAGCGGTGCAGGGGGCCCTTGATGCCGACGGCGAGCGCCTGCTGGATGCTGAAGAGCGCATGGTTATCGACCTGCA GATGCAGGAACTGGCCGAACTGATGAAAGGCAACGATGGCTACGCCATCGAGCAGCAGACCAAGCGCTTGTCGCAGGTGACTGATGCCTTTGCCGCCCGC CGCATGGATCAGACGGTGAAAGCCGCACTGGCCGGGCGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTAATGCCGCAGGTCATTTTTCTGCCACACGCCGAGCACTGCCCGGATGGTATGGTCGTGGAGGCTGAGACCGGCAAGTCCATCCTCGAAGTTGCCCATG ACAACCACATCGAAATCGAAAGCGCCTGCGGCGGTGTGTGCGCCTGCACCACGTGCCATTGCGTGATTCGCGAAGGATTCAATAGCCTTGAAGAGGCTGA TGAGCTGGAAGAAGACTTTCTTGATCGTGCCTGGGGCCTGGAAGCGACTTCTCGCCTAAGCTGTCAGGCCAAGGTCGGGACCGAAGACATCACCGTCGAA ATCCCGAAATATTCCCTCAACCATGCAGCCGAAGCGCCGCATTGATTCAAGGAAATGTCATGAGCCTGAAATGGGTTGATGTACAAGAAATCGCTATACA GCTTGCTGAAGCTCATCCGGAGGTCAATCCTCTGACTGTCAACTTCGTCAAGCTGCGCAACCTGGTGATGGAGCTGCCGGACTTCGATGACATCCCCGAC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLPDVNGQVILPSAVRYHADRTEVGESAKLAASTDPLNTVLSVKRLMGRGLSDVKQLG DQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILKVLRQRAEKTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GLVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIASWIITSAGLSADLDPGAQRNLLQTACAAKEALTDAASVEVSYGTWSAQLTREAF DALIEPMVARSLKACRRAVRDSGIELEDVGAVVMVGGSTRVPRVREAVAEAFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMIHVLQGERELISDCRSLARFELRGIPAMVAGAAKIRVTFQVDADGLLSVAARELASGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLLEAVQGALDADGERLLDAEERMVIDLQMQELAELMKGNDGYAIEQQTKRLSQVTDAFAAR RMDQTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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