Strain | Pseudomonas fluorescens strain AU10973 Scaffold_220, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AATGGGCGGCCTTGGCCCCATGGCCGGCCAGAATCACCACTTCAGCCAGTTCGCGCCGGAGAAAATCCCTTACGCGATCAAGCGCTACGTGGATGAAACC GCTCGCCTTTACGGGGTGCTCGACCGACGCCTGGCGGACCGTGCGTTCGTGGCGGGTGAGGACTACAGCATTGCCGACATGGCGATCTACCCATGGATTG TTTCCCACAAGTGGCAGAGCCAGCGCCTGGAAGATTTCCCACATGTGCATCGTTGGTTCAACAGCATCAAGGAGCGGCCGGCAACCGTCCGGGCGTATGA ACTGGTGCAGAAAGTGAACCCGCCAAAGCCCTGAGTTGCAGTCGTACTCGCTCAACAGGTGGGCGCGGGCTTGCTCGCCCCCACTTTGATTTGCGCAAGA CTCAAGATCTGACGCTTAACCCAAACTCCTGCTTGCGTCGTTTCGCCGCGCTCACTAACGTAGCGCCTTTACTGACGCTACCCCCCGCAGGAGCTTTGCC
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DNA Sequence for Gene |
>MZ33_RS07670
ATGGCCTCGCCAGCCCTCTCACATTTTATTCCCCGGTTCGGCGTTGCCGCGGCAGTGGCCAGTGCATTAAGCCTGGCCGGTTGCCAGCTCCAGAGCACCC AGGACACCCTGCCCCCTGTCGCCGGCGTACAGCCGATCAAAGGCTTGGCGCAGAACGTATCGGTACGCCGCAATGCCCAGGGCATGCCGCTGATCGAAAG CAACACCTTCCATGACGCGCTGTTCAGCCTTGGTTACGTGCACGCCAGCGACCGCATCACCCAAATGGTCACCCTGCGCCTGCTGGCCCAGGGTCGCCTG GCGGAGATGTCCGGCCCCGAGGTCCTGGACGTCGACCGGTTCATGCGTGCGGTCAACCTGAAGAAAAGCGCCGGCGAGCTCTACAACGCGTCGTCACCGC GCCTCAAGCGCTTCTTTGAAGTGTATGCCCGCGGCGTCAACGCCTACCTGTTCCGCTACCGCGACAAGCTGCCGCCAGACCTGGCCCAGGCCGGCTACAA GCCCGAGTACTGGAAGCCGGAGGATTCGGCGCTGCTGTTCTGCCTGCTCAACTTCAGCGAGTCGGCAAACCTGCAGGAAGAAATTTCGTCGCTGGTGCTG GCGCAGAAAGTCGGTGTCGACAAACTCGCCTGGCTGACCCCAAGCGCTCCGGATGAGGCGATCCCGCTGGCCGAGGCCGAGAAACTCAAGGGCGTGAACC TGGGCCAGGTGACCGGTCTCGCCGGGTTGGACGCGGTCGGCCAGCAACTGAGCAGCCTCAACTCGCTGGCAGTGACGACATCCAGTAACTGGGCGATCGG TCCGCAACGCAGCCGCAGCGGCAAAAGCTTGCTGGCAAGCGACCTCGCCGCCCAGCCGCAAGCGCCATCCCCCTGGAGCTACGTGCAGATCCGCGCGCCG AAGTACCAGGCCGTGGGCGCATCGATTGCCGGTTTGCCGACCCTGTTGTCCGGCTTCAACGGCAAAGTCGCGTGGAGCATGAGCACGGTCAAGGGCGACA CCCAGGACCTGTTCCTGGAAAAGGTCAAACGCCAGGGCAGCGCGTTGTACTACGAGAACAACGGCAAATGGCTACCGGCGGGCGTGCGCAATGAAACCTT CTTCGTCAAAGGCCAGCGCTCGATTCGCGAGGTGGTGTACGAGACCCGCCACGGCGCCCTGCTCAACAGCAGCCAGGCGCTGACCACGGGCCTCGGCCTG GCCTTGCAAACCGCCGACTTCAAGGACGACAAGAGCCTTGATGCGTTCTTCGACCTGTCCCGCGCGCAAAACGCCGGCAAGGCCTCGGACGCGACGCGGG AAATCCGCGCCATCGCACTGAACATGGTCTTCGCCGACGCCAGCAACATTGGCTGGCAGGTCACCGGCCGCTTCCCCAACCGCCGCGAAGGCGAAGGCCT GCTGCCGTCGCCCGGCTGGGACACGCGCTTCGACTGGGATGGTTACGCCGACGCCATGCTGCACCCCTACGACCAGGACCCGGCCCAAGGTTGGATCGGC ACCGCCAACCAGCGCACCGCGCCCCGTGGTTACGGCATGCAGTTGTCCAACTCATGGGATGCCCCGGAGCGCAGCGAGCGCCTGGCGCAATTGGCCAATG CCGGCAAGCATGACAGCCGTAGCATGATCGCCATGCAGTACGACCAGACCACCCTGTTCGCCGCCAAGCTCAAGACCCTGTTCCAGGCACCGGGCATGGC CCAGCCGCTGAAACAGGCCATTGATGCACTGCCTGCTGGCGAACAGGCCAAGGCACGTGAAGCGCTGGGTCGCCTGATGGCCTTCGATGGTCGGCTGGTG TCCACGTCCGCCGACGCCGCGCTCTACGAACTGTTCCTGCAGGAAAGCACCAAACAGATCTTCCTCGACGAGCTCGGCCCGGAAAACAGCGCCAGTTGGA AGGCGTTTGTGAGCAACGCCGGCCTGTCCTACGCCGCCCAGGCCGACCATTTGCTGGGCCGTGAAGACAGCCCGTTCTGGGATGACGTGCGCACCCCGCA GAAGGAAGACAAACCCGCGATCCTGGCCCGCAGCCTGGCCGCCGCGATCAGCGCGGGCGACAGCCAGTTGGGTGCCGATCACAAGGCTTGGCAGTGGGGC AAACTGCACACCACCACCTGGAAAAACACCAATGGCCAAGTGATTCGCGGCCCACTGGCTTCCGGTGGTGACCACAACACCTTGAACCCGGCGCCCTACC GCTGGGGCCAGGACTTCACCACCACCCAGGTGCCGGCGCTGCGCATGATCGTTGACTTCGGCCAGGTGGAACCGATGATGGGCCAGGGTGGCATCGGCCA GTCCGGCAACCCGGCCAGCCCGAACTATGCGAATGGCATCGACCCATCGCTCAAGGCGCAATACCTGAGCTTCCCGATGCAGCCGCAGAACTTCGAGAAG GTGTATGGGAAGGCCCGGCTGACCCTGACGCCCGGCAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCCGGTTCCACCTGAAGGAACCGGATCAAACTGTGGGAGCTGGCTTGCCAGCTCCCACATTTGTTCTGCATGCATTCAGATAGAACTTCTGCACTCGACC CCGCCTCCTACCTGATAAGCCCATCGCCCCCGGCACGCCCATGGACCTTGTCATCGCCCGCCCCGAAGGCCTCTACTGCACCGCCGGAGATTTCTACATC GACCCCTGGCGGCCGGTGGCGCGTTCGGTCATCACCCATGCCCACGGCGACCACGCCCGCACGGGCAACCAGCACTACCTGGCGGCCGCCCCCGGTGAAG GCATCCTGCGTTCACGCCTGGGCCAGGACATCAACCTGCAGACCCTGGCCTACGGCGAGCGACTGGTCCACCACGGCGTCACCTTGAGTTTTCACCCGGC CGGGCATGTGCTCGGCTCGGCCCAAGTGCGCCTGGAATACCAGGGCGAAGTCTGGGTCGCGTCCGGTGACTACAAGGTCGAGCCCGACGGCACCTGCGCC
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Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MASPALSHFIPRFGVAAAVASALSLAGCQLQSTQDTLPPVAGVQPIKGLAQNVSVRRNAQGMPLIESNTFHDALFSLGYVHASDRITQMVTLRLLAQGRL AEMSGPEVLDVDRFMRAVNLKKSAGELYNASSPRLKRFFEVYARGVNAYLFRYRDKLPPDLAQAGYKPEYWKPEDSALLFCLLNFSESANLQEEISSLVL AQKVGVDKLAWLTPSAPDEAIPLAEAEKLKGVNLGQVTGLAGLDAVGQQLSSLNSLAVTTSSNWAIGPQRSRSGKSLLASDLAAQPQAPSPWSYVQIRAP KYQAVGASIAGLPTLLSGFNGKVAWSMSTVKGDTQDLFLEKVKRQGSALYYENNGKWLPAGVRNETFFVKGQRSIREVVYETRHGALLNSSQALTTGLGL ALQTADFKDDKSLDAFFDLSRAQNAGKASDATREIRAIALNMVFADASNIGWQVTGRFPNRREGEGLLPSPGWDTRFDWDGYADAMLHPYDQDPAQGWIG TANQRTAPRGYGMQLSNSWDAPERSERLAQLANAGKHDSRSMIAMQYDQTTLFAAKLKTLFQAPGMAQPLKQAIDALPAGEQAKAREALGRLMAFDGRLV STSADAALYELFLQESTKQIFLDELGPENSASWKAFVSNAGLSYAAQADHLLGREDSPFWDDVRTPQKEDKPAILARSLAAAISAGDSQLGADHKAWQWG KLHTTTWKNTNGQVIRGPLASGGDHNTLNPAPYRWGQDFTTTQVPALRMIVDFGQVEPMMGQGGIGQSGNPASPNYANGIDPSLKAQYLSFPMQPQNFEK VYGKARLTLTPGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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