Pseudomonas fluorescens AU10973, MZ33_RS05320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU10973 Scaffold_220, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGCAGCGATACCATCTCCATCGAGTACAAGGAGTTCGGCATCCGCCTGACCCTGACCCCCACGGTGATCGACCGTAACCGCATCACCCTCAAGGTGG CGCCGGAAGTCAGCGAGTTGGACTACAGCAACGCCGTGCAGATCCAAGGCATTCAAGTGCCGGCGCTGACCGTACGCCGCACCGACACCAGCGTGTCCCT GGCCGATGGCGAAAGCTTCGTGATCAGCGGCCTGATCAGCACCAACAACCGCTCCACCATCAGCAAGTTTCCCGGGCTGGGCGACATCCCGATCCTCGGC GCGTTTTTCCGCGACTCCACTATCAGCCGCGAGGAAAAAGAACTGTTGATGATCGTTACGCCGCACCTGGTGCAGCCGTTGGCCGCCAACGCCCAACTGC CCTCCTTGCCCGGCGAAAAACTGCGCAACTACGACCCGAACTGGTACCGCCTGTTCTTCCTGGAAAACGGCAACTTTGACCGTCGCAGTGGACTTTCCCA
|
|
| DNA Sequence for Gene |
>MZ33_RS05320
ATGAGCGATAGCCTGAGCCAGACCTTCCTCGCCATCACCCGCAACACCACTGACCTGGAGTGGCTGCAGGGTGCACTCGCGCCCCTGGGCCAAGTCGTGA GCGCCGGCACCGGCAGCCTGGACGAACTGCTGGCACTGGTCGACGTGACCTTTGCCAACCTGGTGTTTGTCGGCCTGGACCGGGAAAACGTGGTGGCCCA GAGCGCGCTGATCGAAGGCGCCCTGGAAGCCAAGCCGATGCTCGCGGTGGTGGCTCTCGGCGATGGCATGGACAACCAGCTTGTCCTGAACGCCATGCGT GCCGGTGCCCGCGACTTCGTTGCCTACGGCTCGCGCTCCAGTGAAGTGGCAGGGCTGGTGCGGCGCCTGAGCAAGCGCCTGCCGACGGTCACGCCCAATG CCCAGCTGGGTGGCCTGACCGTCTTGTTTGGTACCCAGAGCAACGCGGATGGGGCGATGCTGGCTACCCACCTGGCGCTGGTGGTACAGCGGAGCGGCCA GCAGACACTGCTCCTCGACCTGGGCCTGCCGCGCAGCGACAGCCTGGCGCTGCTGGGCCTGGAAAGCACGTTCAATTTCGGTGATGCCTTGCGGCATTTG CGCCGCCTCGACACGACCTTGATCAACAGTGCCTTCACCACCGCCCTGGATGGCCTGCGCATCCTGGCGTACGCCACCGGCGACGAACCGCTCAAGCTCA CCAGCGCTGCCGAGTTGTTCATGTTGCTTAGTGCCCTGCGCCAACACTTCCAGCACATCGTCGTGAATATTACCGGGCAGCCGGACAGCGAAGCACTGCG CACCTTTGTCAGCCACTGCGACAAGCTGCTGTGGTGCACCGACCAGAGCGTGCTGGACTGCCGCCGCAACCTGGCGGTCATCAACCGCTGGCGTGAAAAA GGCATGAAGCTCGATCACGCCAAGCTGGTGGTGGACCGCTACATCAAGGCCTGTGCACCCGACACCGAGGCCCTGGAAAAAAGCTTCGGCCTCGAATGCA TCGCCGTACTGCCCCTGAGCGCCGAGTTGCGCCTGAATGTAAAAAACCAGGGCCAGACCCTGTTTGCCCTGGCCCCACGAGAACCCTTGACCCAAGCCGT GCGTACCCTGGGCGAACGCCTGGCAAAACGCTCCGAGGGCCTTGCAAAACCCTCCATGCGCTGGTTTGAGCGCTTCCTGGGGTCTGGACGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGGCGAAAAACTGTTTGGCGGCCCGGCGCGCAGTGCCAGTGGCAACAGCGATCACGACGGCCTGAAACTGGTGCTGCATCGCTACATCATCGACGCCAT CGAGGAGTCGGGTAAAAACCTGCTCGAAGGCACGCGCCAATCCCTGGCCCAGTTTGTCATCGACAAGGTCTCGGAATACATCACGCGCATGCGCCTGGCG ATCTCCCGCTACGAGATGGAGCGCCTGGCCGAAGAGATCGTCGACGAACTCACCGGCTTCGGCCCCCTGGAAGTGCTGCTGCGCGACCCCTCGGTGACCG AGATCCTGGTCAACGGACCGCACCGGGTATTTATCGAACGTGACGGCCTGCTGCACCAGAGCGACCTGCGTTTCATCGACGACCACCATGTCGAACGCGT GATGCAACGTATCCTCGCGCCATTGGGCCGACGCCTGGATGAGTCCTCGCCGATGGTGGACGCGCGCCTGCCCGACGGTAGCCGGGTCAACGCGATTATC
|
|
| Amino Acid Sequence |
>pilus assembly protein
MSDSLSQTFLAITRNTTDLEWLQGALAPLGQVVSAGTGSLDELLALVDVTFANLVFVGLDRENVVAQSALIEGALEAKPMLAVVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPTVTPNAQLGGLTVLFGTQSNADGAMLATHLALVVQRSGQQTLLLDLGLPRSDSLALLGLESTFNFGDALRHL RRLDTTLINSAFTTALDGLRILAYATGDEPLKLTSAAELFMLLSALRQHFQHIVVNITGQPDSEALRTFVSHCDKLLWCTDQSVLDCRRNLAVINRWREK GMKLDHAKLVVDRYIKACAPDTEALEKSFGLECIAVLPLSAELRLNVKNQGQTLFALAPREPLTQAVRTLGERLAKRSEGLAKPSMRWFERFLGSGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|