Pseudomonas fluorescens AU10973, MZ33_RS12890
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU10973 Scaffold_210, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCCTCGCCGCTATATCCAACCGTCCCATGTGGTGCGGATCGCGCCGATGATTTACGGCGGCTCGTTCCGCCGCGATTCGAAACTGGCCGCCGAACAC GCGAGCAAAGTGCGCTCGGCGGGCAAGTTGGGCTATTACTGGCAATTGTTCGCGGGGCTGGGCTGGACCAGCATCCATTGGCTGCACAAGATCCGCCAAC CCACGCTGGTACTGGCGGGGGACGACGACCCACTGATCCCGCTGATCAATATGCGCATGCTCGCCTGGCGCATCCCCAACGCACAGCTGCACATCATCGA TGACGGCCACCTGTTCCTGATCACCCGGGCCGAAGCCGTTGCACCGATCATCATGAAATTTCTCGAGGAGGAGCGCTTGCGGGCCGTGATTCACCCACGA CCTGCGGTGTAGGGACCACACCGCCGCGCAACTTGCCGAGAACCGACTATGGTTCTGAATTGGCGTGCCTGTTGATGGCTTGACGAAGGAGTGTTGGCTC
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| DNA Sequence for Gene |
>MZ33_RS12890
ATGCGAGAAAGACCCGTGACGAACCCGGCGCCCACCCCTGCCGCGTTCATCAATGCGCAAAATGCGATTACCGGCCTGCGCGGTCGAGATTTGCTGTCGA CCCTACGCAGCGTCGCCGCCCACGGTTTGCGCAACCCCCTGCACACTGCCCGCCACGCCTTGGCCCTGGGTGGCCAGTTGGGCCGCGTGCTGCTGGGTGA GACGGTGCATGCACCCAACCCCCACGATAGTCGCTTCACCGACCCCACCTGGGCCCTCAACCCGCTGTACCGCCGCAGCCTGCAAGCCTATTTGAGCTGG CAGAAACAAACGCGGCACTGGATCGATGACAGCTCAATGAGTGCCGATGATCGCGCCCGTGCCCATTTTGCCTTCGCCCTGCTCAATGATGCCGTCTCCC CCTCCAATACCTTGCTCAACCCCTTGGCGATCAAGGAACTGCTCAACTCCGGCGGCAACAGCGTGGTACGCGGCGCCAGCAACCTGTTCGAGGATTTGCT GCACAACAACGGCCTGCCGCGCCAGGTCAGCAAGCACGCCTTCGAGGTGGGCAAGACGGTCGCGACGACGCCTGGCTCAGTGGTGTTTCGCAATGAGCTG CTGGAGCTGATCCAGTACAAGCCCATGAGCGAAAAACAGTACGCCAAGCCGCTGCTGATCGTGCCGCCGCAGATCAACAAGTACTACATCTTCGACCTGA GCCCGGCCAACAGCTTTGTGCAGTACGCCCTGAAAAACGGCCTGCAGACCTTCATGGTCAGCTGGCGCAACCCGGATGTGAGGCATCGCGAATGGGGCCT GTCCACCTACGTTGCGGCGCTGGAAGAAGCCCTCAATGTCTGCCGGGCCATCACCGGCGCCCGCGAGGTCAACCTCATGGGCGCCTGCGCTGGCGGCCTG ACCATCGCCGCCCTGCAAGGCCACCTGCAAGCCAAGCGCCAACTGCGGCGGATCTCCAGCGCCAGTTACCTGGTGAGCTTGCTGGACAGCCAGATCGACA GCCCCGCCACGTTGTTCGTCGACGAACAAGCCCTGGAAGCCGCCAAGCGCCGTTCCTACCAGCAAGGCGTGCTGGATGGCCGCGACATGGCCAAGGTGTT CGCCTGGATGCGCCCCAATGACCTGATTTGGAACTACTGGATCAACAACTACCTGCTGGGCAAGGAGCCGCCGGCCTTCGACATCCTGTACTGGAACAAC GACAACACGCGCCTGCCCGCCGCGCTGCATGGCGACCTGCTGGACTTCTTCAAGCACAACCCATTGAGCCACCCCGGCGGCCTGGAAGTCTGCGGTACGC CCATTGATTTGCAGAAGGTCAACGTGGACAGCTTCAGCGTGGCCGGGATCAACGACCACATCACGCCGTGGGACGCGGTGTATCGCTCCACCCAATTGCT GGGGGGCGAAAGGCGCTTCGTGCTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGGCCAACTATGTCGAGAACCTCAAG CTGAGCAGCGACCCACGGGCCTGGTACTACGATGCCAATCACGTCGAAGGCAGTTGGTGGCCGCAGTGGCTGGCGTGGGTGCAGCAGCGCTCGGGCGTGC AACGCGAAACCCTTACCGCCCTGGGCAACCAGAACTACCCACCGATGGAAGCAGCACCAGGCACCTATGTGCGGGTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCAACGATCCCATTAAGAAGACTGGATGAAGACGCGCGACCGTATCCTTGAATGTGCCCTGCAGTTGTTCAACCAGAAGGGCGAACCCAACGTGTCGA CCATGGAGGTGGCCAATGAAATGGGGATCAGTCCCGGCAACCTCTACTATCACTTCCATGGCAAGGAGCCACTGGTACTGGGGCTGTTCGAGCGCTTCCA GAATGAACTGGCGCCCCTGCTCGACCCGCCAGCGGATGCGCAACTGGAAGCTCAGGATTACTGGCTGTTCCTGCACCTGATCGTCGAGCGCATGGCGCAT TACCGGTTTTTGTTCCAGGACCTGTCAAACCTGGCAGGGCGCCTGCCGAAGCTGGCCAAGGGGATTCGCAACCTGCTGACCGCGCTCAAGCGCACGCTCG CCTCCTTGCTGGCGCGTTTGAAAGCCGATGGGCAATTGGTCAGCGATACCCAGGCACTGGGGCAACTGGTGGAACAGATCACCCTGACCCTGCTGTTTTC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVTNPAPTPAAFINAQNAITGLRGRDLLSTLRSVAAHGLRNPLHTARHALALGGQLGRVLLGETVHAPNPHDSRFTDPTWALNPLYRRSLQAYLSW QKQTRHWIDDSSMSADDRARAHFAFALLNDAVSPSNTLLNPLAIKELLNSGGNSVVRGASNLFEDLLHNNGLPRQVSKHAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYAKPLLIVPPQINKYYIFDLSPANSFVQYALKNGLQTFMVSWRNPDVRHREWGLSTYVAALEEALNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRISSASYLVSLLDSQIDSPATLFVDEQALEAAKRRSYQQGVLDGRDMAKVFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLQKVNVDSFSVAGINDHITPWDAVYRSTQLLGGERRFVLSNSGHIQSILNPPGNPKANYVENLK LSSDPRAWYYDANHVEGSWWPQWLAWVQQRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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