Strain | Pseudomonas fluorescens strain AU10973 Scaffold_200, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACGTCAAGAAAGCCCTCACCGGCATGCTTGGCAGCGACGTCCGGGAGAACATCCTGGGTATCGCCGAAGTACGTGACGTGTTCCGCTCGCCGAAATTCGG CGCGATCGCCGGCTGCATGGTTGTCGAAGGCACCGTGTACCGTAACCGTCCAATCCGTGTACTGCGTGAAGACATCGTTATCTTCGAAGGCGAGCTGGAA TCCCTGCGCCGCTTCAAGGATGACGCTTCCGAAGTACGTGCCGGCATGGAATGCGGTATTGGCGTCAAGAGCTACAACGACGTCAAGGTGGGCGACAAGA TCGAAGTCTTCGAGAAGGTTCAGGTTGCTCGCAGCCTCTAACTCGCGCACTTCCGGAGCCACCCGGCGTGTGGGCATGCAAATGCCCCTCGCTGCGTACG GACTCTAAACGCAACGCCCGGTCTGGCTTTTGTCAGGCCGGGCGTTTGCCGCTTTCAGACCCCACGGGTTTCACCGTGTGGCAGTAACAGGTAACAAGAC
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DNA Sequence for Gene |
>MZ33_RS15655
ATGGCAAAAGAATACAGCCGTACCCAGCGTATCGGCGATCAGATGCAGCGCGAGCTGGCCCAACTGATTCGTCGCGAAGTCAAAGACCCTCGCGTTGGCC TGGTCACCATCACCGCCGTAGAAGTGAGCCGTGACGTGGGTCACGCCAAGATCTTCATCACCGTGATGGGTCAGGACAGCAGCGAAGAGATCGCGCAAAG CATCAAGGTGCTCAACTCGGCTGCAGGTTTCCTGCGCATGCAGTTGGCCCGTGAAATGAAGCTGCGCAGTGTTCCTCAGTTGCACTTCCACTACGACGAA AGCGTCGTGCGTGGTGCGCACCTGTCGGCACTGATCGAGCGCGCCGTGGCTGAAGACAGCCAGCATCCGTCCACACCTGAAGACGCCAAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGGTGGCTCAGGTCAAACGTATCCGTCGCAATGTCAGCGGCATCATTCTGCTCGACAAGCCCATTGGCTTTACCTCCAATGCTGCGTTGCAGAAGGTCC GCTGGCTGCTCAACGCCGAAAAGGCCGGGCACACTGGCAGCCTCGATCCCTTGGCCACCGGTGTACTGCCGTTGTGCTTTGGCGAGGCGACCAAGTTTTC GCAGTACCTGCTCGATTCCGACAAGGGTTACGAAACCCTGATGCAACTGGGCAAGACCACCACCACGGCGGATGCCGAAGGTGATGTTTTGCAGGTTCGC GACGTGACCGTTGGTCGTGCTGATATCGAAGCCGTTTTACCCGGTTTTCGTGGGGAAATCAGTCAGATACCGCCGATGTACTCGGCGCTCAAGCGTGATG GACAGCCTCTTTACAAGCTGGCACGTGCGGGCGAAGTAGTGGAGCGCGAACCGCGTTCTGTTACTATTGCGCGCTTGGAATTGCTCGCCTGTGAAGGCGA
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Amino Acid Sequence |
>ribosome-binding factor A
MAKEYSRTQRIGDQMQRELAQLIRREVKDPRVGLVTITAVEVSRDVGHAKIFITVMGQDSSEEIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDE SVVRGAHLSALIERAVAEDSQHPSTPEDAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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