Pseudomonas fluorescens AU10973, MZ33_RS23705
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU10973 Scaffold_180, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAATGGCTTGGAAGTCGGCTTGCCATCGTTGCGCGAGCGCAGTGATAAATCCCAGTTGCTGGATTTCCTGCTGGCCCAGGAGGCCAATGGCGAGACGGT AGCGCTCGACCCGGCGGCGCGCATGGCGCTGTTGGCATTTGCCTGGCCGGGTAACGTCCGCCAACTGCGCACGGTGCTGCGGACCTTGGTGGCGCTGTGT GACGAAGGGCGTGTCAGCCTTGATGACCTGCCTGCGCAGATTCGCCAGGCCCGCCCCGTGGTCGTCGCGCCGGCCACGCCGCAGGAGTCGCCGCTGGAAG ACGCCGAGCGCCTGGCATTGCTCACGGCGCTGCAGCAACAGCGCTGGCACATGACGCACACGGCCGAGCAACTGGGCGTCAGCCGCAACACCCTGTATAG AAAGCTGCGCAGGCACGGTATCGCACGTCACGCCCTCAGCTAAAAGGTGCGATTTTCGCCCCCCTGCGCTAACCTGCCTCGATGTTTTACGAGGTCGACT
|
|
| DNA Sequence for Gene |
>MZ33_RS23705
ATGCACATTCATATTCTCGGTATTTGCGGCACGTTCATGGGCTCGATGGCGGTTCTGGCCAAAGAGCTCGGGCACCACGTCACGGGCTCCGACGCCAACG TCTATCCGCCCATGAGCACGCAACTCGAGGCCCAGGGTATCGAGCTGACCCAAGGCTACGACCCCGCACAATTCGACCCGGTCCCGGACCTGGTGGTGAT CGGCAACGCCATGTCCCGTGGCAACCCGGCGGTCGAGTACGTACTCAATAAAGGTTTGCCTTATGTGTCTGGCCCGCAGTGGCTGGCCGACCATGTGCTG CAAGGCCGCTGGGTGCTGGCGGTTGCCGGCACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCACGCAGGCATGAGCCCGGGCT TTTTGATTGGCGGTGTGCCACAGAACTTCTCGGTGTCGGCGCGCCTGGGCGACACGCCGTTCTTCGTGATCGAGGCCGATGAATACGACAGCGCCTTCTT CGACAAACGCTCCAAGTTCGTTCACTACCGCCCGCGCACGGCGATCCTGAACAACCTTGAGTTTGATCACGCCGACATCTTTCCCGACTTGGCGGCCATC GAGCGCCAGTTCCACCACTTGGTGCGCACGATCCCGAGCGAAGGCCTGGTGATCCACCCGACCACCGAGCCGGCCTTGCAGCGTGTGATCGAAATGGGCT GCTGGACCCCGGTGCAAACCACCGGCGCGGGCGGCCAGTGGCAGGTCAAGCTGCTCAGCGAAGACGGCTCCCGGTTCGAAGTGCTGTTCGAAGGCGAAGC CCAAGGCATTATCGAGTGGGACATGACCGGCCAGCACAACGTTGCCAATGCCCTGGTCAGCCTGGCGGCTGCGCGGCATGTGGGCGTGGTGCCGTCGATG GGCATTGCCGCGCTGAGCGCGTTCAAGAGCGTGAAGCGGCGGATGGAAAAAGTCGCCGAGGTGAATGGCATTACGATCTATGACGACTTTGCCCACCACC CGACCGCCATTGCCACCACCCTGGATGGCCTGCGCAAGCGGGTCGGCGCCGCGCCGATCATCGCGATTGTCGAGCCGCGTTCCAACTCCATGAAGCTCGG CGCCCACCGCGATGGCCTGCCAGAAAGCGTCGACGACGCCGACCAGGTGGTGTGGTACGCACCGGCCAATCTTGGCTGGGACCTGCCCGCGATTGCGGCA CTGTGCACCGTGCCATCAACTGTGTGCGACACCCTCGAAGGCATCATCGAGCACGTCAAGCACCAGGCCAAGCCTGGCACCCATGTGGTCGTCATGAGCA ACGGCGGTTTCGGTGGCCTGCACGGCAAACTGGCCGAGGCACTGAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGGCCCGGAACGCGTCACCCTGGCGATGACCGGCGCATCGGGCGCGCCCTATGGCTTGCGCCTGCTGGACTGCCTGGTGCGAGAAGAACGTGAGGTGCA CTTCCTGATCTCCAAGGCCGCGCAGTTGGTGATGGCCACCGAGACTGATGTGGCGCTGCCGCCCAAGGTGCAGATGATGCAGGCCTTCCTCACCGAGTAC ACCGGTGCGGCGGCGGGGCAGATCAAGGTTTACGGTAAAGAGGACTGGATGTCGCCCGTGGCGTCCGGATCGGGTGCGCCGGCGGCGATGGTTGTAGTGC CGTGCTCCACCGGCACCTTGTCGGCGATTGCCACGGGTGCCTGCAACAACCTGATCGAACGTGCGGCGGACGTGACGCTGAAGGAGCGCCGGCAGTTGAT CCTGGTGCCGCGTGAGGCGCCGTATTCGAGCATTCACCTGGAGCACATGCTCAAGTTGTCGAACATGGGCGTAACGATTTTGCCAGCCTCGCCCGGTTTC
|
|
| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPAQFDPVPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGDTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGAGGQWQVKLLSEDGSRFEVLFEGEAQGIIEWDMTGQHNVANALVSLAAARHVGVVPSM GIAALSAFKSVKRRMEKVAEVNGITIYDDFAHHPTAIATTLDGLRKRVGAAPIIAIVEPRSNSMKLGAHRDGLPESVDDADQVVWYAPANLGWDLPAIAA LCTVPSTVCDTLEGIIEHVKHQAKPGTHVVVMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|