Pseudomonas fluorescens AU10973, MZ33_RS03025

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU10973 Scaffold_140, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGCCTGGTCACCGGTGGCAAGGCGGTGGAAGGCAATGGCTTCTTCTTCGAGCCGACCGTGCTGGCTGACGCACAGCAGGACGACGAGATCGTGCGCCGT GAGGTTTTCGGCCCGGTGGTGTCGGTGACCAAGTTCTCCGATGAAGCACAGGTGCTGGGCTGGGCCAATGATTCGGACTACGGCCTGGCGTCATCGGTGT GGACTGCCGACGTAGGACGCGCCCATCGCTTGGCCGCACGCCTGCAATACGGCTGCACCTGGGTGAACACCCACTTCATGCTCGTCAGCGAAATGCCTCA CGGCGGTCAGAAACTGTCGGGTTATGGCAAAGACATGTCCATGTACGGCTTGGAGGACTACACCACCGTTCGCCATGTGATGTTCAAGCACTGACGCTTT ACCCCTGTGGGAACGGTCTTGTGTGGGAGCACGCTCGCTCCCACAGTCAGCCCGGCGCCCACGGGGCCTCATAACAATAAATACTTCGTAGGTTCTCCTC
DNA Sequence for Gene
>MZ33_RS03025
ATGGATATCACCCGCCGCGACTTCCTCAACGGCGTCGCTGTCACCATTGCCGCTGGCATGACCCCGCTGCAACTGCTTCAAGCCGCTCCCGATGGTCGCT ACTACCCACCCGCCCTCACCGGCCTGCGCGGCAGCCACGTCGGCTCGTTCGAAGTGGCGCACCAGATGGGCTGGGAAAAGAAGGTGTTCGACACCGACAA ACTGCCGATCACCGAGCACTATGACCTGATAGTCGTGGGTGGCGGCTTGAGTGGGCTGTCGGCGGCGTGGTTCTACCGTGAGAAGCACCCCAAGGCGAAG ATCCTGATCCTGGAAAACCACGACGACTTCGGCGGCCATGCCAAGCGCAATGAATTCCAGGCCGGTGGCCGCATGATCATCGGCTACGGTGGCAGCGAGG CGTTCCAGTCGCCCAACCACCTGTACAGCAAGGAGGTGAACGGGCTGCTGAAGAAACTCGGGGTGAACATCAAGCGCTTCGAAACCGCCTTCGACCGCCA GTTCTACCCAGGCCTCGGGCTGTCGCGCGGGGTGTTTTTCGACAAGGAAAACTTCGGCGAAGACAAACTGGTGACCGGCGATCCCACCCCGATGGTGGCC GACGACATCGCGCCAGACCGACTGAATGCGCGTGCCATCAGCGATTTCATCAATGACTTCCCGTTGCCACCGGCAGACCGCCAGGCCCTGATTGAGCTGC ACACGGCGCCCAAGGACTACCTGCCGGGCAAGACCGCCGAAGAAAAGGCCACTTATCTGGCGGCGACCAGCTACCGCGATTTCCTGCTGAAGAACGTCGG CCTGTCAGAAGGCGCGGTGAAGTACTTCCAGAGCCGGACCAATGACTTCATGGCCCTGAGCATTGATGCGGTGGCCTCGTCCGATGCCTACAGTGTGGGT TTCCCTGGCTTTGCCGGGATGAACCTGGCGCCGATCAGCGAAGAAGCCGCTGCAGAAATGGAAGAGCCCTATATCTATCATTTCCCGGATGGCAATGCGT CGGTGGCGCGGTTGCTGGTCCGCAGTCTGATCCCAGGCGTGGCGCCGGGGCACACCATGGACGATATCGTGTTGGCCGCGTTTGACTACGCCAAGCTCGA CCAGCCCAAGGCCGCCGTGCGCTTGCGCCTGAACAGCACGGCGGTCAGCGTGCGCAACGTCGGTGATAGCGTGCATGTCGGCTACAGCCGTGGCGGACAA CTCGCACAGGTGCGCGGCAAACGCTGCATCCTGGCCTGCTACAACATGATGATTCCGTACCTGCTCAAGGACTTGCCGGCGCCCCAAGCGCATGCCCTGA GCCAGAACGTGAAATACCCGCTGGTGTACACCAAGGTGGTGATCCGCAATTGGCAGTCGTTCCAGAAACTGGGCGTGCATGAGATTTACGCGGCGACCCA GCCTTACAGCCGGATCAAACTGGACTACCCGGTGAGCATGGGCGGCTACGACCACCCGCGTGACCCGACGCAGCCGATTGGCTTGCACATGGTCTACGTG CCCACCAGCCCCAACAGCGGCATGAACGCCCGCGACCAGGCCCGCGCCGGGCGGGGCAAGTTGTACGGGCAGACGTTCGAGCAGTTGGAAGCGCAACTGC GTGACCAGCTGCAACGCATGCTCGGCCCGGGTGGTTTCGACCATGAGCGCGATATCCTGGCGATCACTGTCAACCGCTGGTCACATGGTTATGCGAGCTT CTCCAACAGTCTGTTTGATGATGCCGAGGAGAACACAGCGTGGATGAACCTGGCGCGCAAGCCCGTGGGGCATGTGGCCATAGCCAACTCGGATGCGGCA TGGAGTGCGTATGCCCATGCGGCGATTGATGAGGCGTATCGGGCGGTGGGTGAAGTCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGTGCAGTCTGAATATGGGAGCGGGCTTGCTCGCTCCCATATTTGATCCTCATACTTTTCAAGTACTGCGCGCGTCCGCAGAGTCTGAAATGTCTTGTCG CATTTGCAACGCCATCAGCACGCTATCAATCAATTTTCCTACGTCATCGAACCGCTTAAGCTATCCGGCGTCTGTTTAATGTCCGTTGCGTTTGGTCGAA GGCATGTCCGAACCGTAATTTCTGATCCGCTACGTGCCAGGAAAGGCGCGGGATTTGCTCACGACAGGTTGTCTCTATGCACCGCAGGAATTTGCTCAAA GCGTCCATGGCCATTGCGGCCTACACCGGTTTGTCGGCCAGCGGCCTGCTTGCCGCCCAGGCCTGGGCCGGGAACCGTGCCGCCGACGGCAAGGCCGTGG CGTTCGACTTCGAAGCGCTCAAGGCCCAGGCCAAACAACTCGCTGGGACCGCGTACAAAGACACCAAACAGGTATTGCCGCCAACCCTGGCGACCATGAC
Amino Acid Sequence
>spermidine dehydrogenase
MDITRRDFLNGVAVTIAAGMTPLQLLQAAPDGRYYPPALTGLRGSHVGSFEVAHQMGWEKKVFDTDKLPITEHYDLIVVGGGLSGLSAAWFYREKHPKAK ILILENHDDFGGHAKRNEFQAGGRMIIGYGGSEAFQSPNHLYSKEVNGLLKKLGVNIKRFETAFDRQFYPGLGLSRGVFFDKENFGEDKLVTGDPTPMVA DDIAPDRLNARAISDFINDFPLPPADRQALIELHTAPKDYLPGKTAEEKATYLAATSYRDFLLKNVGLSEGAVKYFQSRTNDFMALSIDAVASSDAYSVG FPGFAGMNLAPISEEAAAEMEEPYIYHFPDGNASVARLLVRSLIPGVAPGHTMDDIVLAAFDYAKLDQPKAAVRLRLNSTAVSVRNVGDSVHVGYSRGGQ LAQVRGKRCILACYNMMIPYLLKDLPAPQAHALSQNVKYPLVYTKVVIRNWQSFQKLGVHEIYAATQPYSRIKLDYPVSMGGYDHPRDPTQPIGLHMVYV PTSPNSGMNARDQARAGRGKLYGQTFEQLEAQLRDQLQRMLGPGGFDHERDILAITVNRWSHGYASFSNSLFDDAEENTAWMNLARKPVGHVAIANSDAA WSAYAHAAIDEAYRAVGEVA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site